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22 protocols using minimum essential medium (mem)

1

Establishment and Characterization of Mel202 Uveal Melanoma Cell Line

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Primary uveal melanoma cell line Mel202 was established from a uveal melanoma patient as described [49 (link)]. Mel202/DR1/CD80 vaccine cells were produced as described [7 (link), 10 (link)]. Briefly, Mel202 cells were retrovirally transduced and selected to stably express HLA-DR1 and CD80. The vaccine HLA-DR1 genotype is HLA-DRB1*0101. Cell lines were cultured at 37°C, 5% CO2. Cells were grown in RPMI 1640 (ThermoFischer) with 1% L-Glutamin (ThermoFischer), 1% sodium pyruvate (PAN-Biotech, Germany), 1% MEM (PAN-Biotech), 0,4% MEM Vitamin Solution (choline chloride, folic acid, myo-inositol, niacinamide, D-pantothenic acid (hemicalcium), pyridoxal-HCL, riboflavin, thiamine-HCL, sodium chloride) (PAN-Biotech), 0,4% PenStrep (ThermoFischer), 0,1% mercaptoethanol (ThermoFischer) and 10% heat inactivated fetal bovine serum (FBS) (C-C-Pro, Germany). Blood samples and PBMC: Blood samples were obtained from healthy donors by leukapheresis. All cell lines and procedures with human materials were approved by the Institutional Review Boards of the participating institutions.
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2

Caco-2 Cell Culture: Human Colon Adenocarcinoma

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Caco-2 cells (passages 25–40), clone HTB-37™, from human colon adenocarcinoma, were obtained from the American Type Culture Collection (ATCC®) and cultured in Minimal Essential Medium (MEM) (PAN-Biotech GmbH, DE, EU) supplemented with 20% fetal bovine serum (FBS).
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3

CFBE41o- Cell Line Transfection

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Parental CFBE41o- cells (kind gifts of Karl Kunzelmann, University of Regensburg, Germany; Dieter Gruenert, University of California San Francisco, USA) were maintained in Earle’s minimal essential medium (MEM; PAN Biotech, Aidenbach, Germany), supplemented with 2 mM L-glutamine (Gibco) and 10% fetal calf serum (FCS; PAN Biotech, Aidenbach, Germany). Wild-type or c.1584G>A variant cDNAs—alone or in combination with other sSNPs—were cloned into the pcDNA3 vector (ThermoFisher, Waltham, MA, USA) and transfected with polyethyleneimine (linear, MW 40.000 Da, Polysciences, Hirschberg an der Bergstrasse, Germany).
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4

Generation and Characterization of GFP-Labeled MDV Viruses

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MDV reporter viruses expressing the green fluorescent protein (GFP) under the control of the herpes simplex virus 1 (HSV-1) thymidine kinase promotor were generated based on the very virulent RB-1B field strain (GenBank accession number EF523390) and the vaccine strain CVI988 (DQ530348). GFP was inserted into the bacterial artificial chromosome (BAC) backbone replacing the Eco-gpt gene [60 (link)]. BACs were confirmed by Illumina MiSeq sequencing to verify sequence integrity.
Chicken embryo cells (CEC) were isolated from 11-day-old VALO specific-pathogen-free (SPF) embryos (VALO Biomedia; Osterholz-Scharmbeck, Germany) as described previously [61 ]. CEC were maintained in minimal essential medium (MEM, PAN Biotech; Aidenbach, Germany) supplemented with 1% to 10% fetal bovine serum, 100 U/ml penicillin, and 100 μg/ml streptomycin (AppliChem; Darmstadt, Germany) at 37°C and 5% CO2.
All recombinant GFP reporter viruses were reconstituted by transfection of fresh CEC with purified BAC DNA using CaPO4 transfection [62 (link)]. The viruses were propagated on CEC for up to 9 passages, and infected cells were stored in liquid nitrogen.
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5

SARS-CoV-2 Animal Challenge Protocol

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The virus isolate BetaCoV/Germany/BavPat1/2020 [15 (link)] T-cell culture passage 3 was used for SARS-CoV-2 animal challenge. The virus was propagated and titrated on Vero E6 cells (ATCC CRL-1586) in minimal essential medium (MEM; PAN Biotech, Aidenbach, Germany) supplemented with 10% fetal bovine serum (PAN Biotech, Aidenbach, Germany), 100 IU/mL penicillin G and 100 µg/mL streptomycin (Carl Roth, Karlsruhe, Germany), and stored at −80 °C prior to experimental infections. Genome integrity, specifically the presence of the furin cleavage site, was confirmed by NGS sequencing of virus stocks used for animal experimentation.
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6

Chicken Embryo Cell Preparation and Virus Propagation

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CEC were prepared from 11-day old specific-pathogen-free (SPF) chicken embryos (VALO BioMedia, Germany) as described previously [55 (link)]. CEC were cultured in Eagle’s minimal essential medium (MEM; PAN Biotech, Germany) supplemented with 10% fetal bovine serum and antibiotics (100 U/mL penicillin and 100 μg/mL streptomycin). Reticuloendotheliosis virus-transformed T cells (CU91) were propagated in RPMI 1640 media (PAN Biotech, Germany) supplemented with 1% sodium pyruvate, 1% nonessential amino acids, 10% FBS, and penicillin–streptomycin, and maintained at 41°C in a 5% CO2 atmosphere. Viruses were reconstituted by transfecting bacterial artificial chromosome (BAC) DNA into CEC as described previously [55 (link)]. Viruses were propagated on CEC for four passages thereafter virus stocks were frozen in liquid nitrogen and titrated on CEC as described previously [56 (link),57 (link)].
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7

In Vitro Biocomposite Hydrogel-Bioglass Assessment

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For the direct in vitro test, the samples were prepared in the form of discs. Glass samples with a diameter of 6 mm and a height of ca. 3 mm were prepared using a PYTE model uniaxial press at a pressure of 5 MPa. Biocomposite hydrogel–bioglass samples with a diameter of 12 mm and a height of 2 mm were prepared by casting in PTFE moulds.
The MG-63 osteoblast-like cells (European Collection of Cell Cultures, Salisbury) were cultured in modified Eagle medium (MEM, PAN BIOTECH, Aidenbach, Germany) supplemented with 10% foetal bovine serum (FBS) (Biowest, Nuaillé, France), 5% amino acids and sodium pyruvate, and 1% penicillium/streptomycin (all PAN BIOTECH, Germany). A total of 2 × 104 cells per sample were seeded and cultured at 37 °C, 5% CO2, with increased humidity. The surface of tissue culture polystyrene (TCPS, 24-well culture plate, Nunclon) was used as a control.
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8

SARS-CoV-2 Isolation and Propagation

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Virus stocks were prepared from a previously published SARS-CoV-2 isolate (BetaCoV/Germany/BavPat1/2020) [29 (link)], which was kindly provided by Drs. Daniela Niemeyer und Christian Drosten, Charité Berlin, Germany. The isolate, referred to as SARS-CoV-2 München (SARS-CoV-2M) [30 (link)], was handled under the appropriate safety precautions in a BSL-3 facility (Freie Universität Berlin, Institut für Virologie) and propagated on Vero E6 cells (ATCC CRL-1586) in minimal essential medium (MEM; PAN Biotech, Aidenbach, Germany) supplemented with 10% fetal bovine serum (PAN Biotech), 100 IU/mL penicillin G and 100 µg/mL streptomycin (Carl Roth, Karlsruhe, Germany).
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9

Liver Cancer Cell Line Treatments

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All cell lines were obtained from the Shanghai Institute of Biochemistry and Cell Biology. HepG2 cells were maintained in DMEM (cat. no. C0006; Hangzhou Keyi Shengwu Jishu Youxian Gongsi) with 10% FBS (cat. no. P30-3302; PAN-Biotech GmbH) and Hep3B cells were cultured in MEM (cat. no. C0032, Hangzhou KEYI) with 10% FBS and 100 U/ml penicillin/streptomycin (Gibco; Thermo Fisher Scientific, Inc.). Mycoplasma testing was performed on these cell lines, which were then determined and authenticated for genotypes using short tandem repeat DNA fingerprinting and passaged for <6 months (18 (link)). Liver cancer cells were divided into four groups: control group treated with DMSO, harmine treated group, regorafenib treated group, harmine plus regorafenib group.
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10

Chicken Embryo Cell and B Cell Isolation

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Embryonated SPF Valo chicken eggs (VALO BioMedia GmbH,) were used for the preparation of chicken embryo cells (CEC). CEC were maintained in minimal essential medium (MEM, PAN Biotech; Aidenbach, Germany) supplemented with 1-10% fetal bovine serum (FBS) and penicillin/streptomycin as previously described [20 ]. B cells were obtained from the bursa of Fabricius by dissociation of the organ and subsequent isolation of the cells by density gradient centrifugation as previously described [21 (link)]. Briefly, the bursa of Fabricius was homogenized through a 40 μm cell filter to obtain a uniform single cell suspension. Suspension cells were carefully applied on a Biocoll separating solution (Biochrom; Berlin, Germany), centrifuged for 12 min at 650 × g with slow acceleration, and deactivated deceleration. Lymphocytes at the interphase were carefully transferred to a new tube, washed with PBS, and maintained in RPMI 1640 (PAN Biotech) supplemented with 10% FBS and penicillin [100 U/mL]/streptomycin [100 µg/mL] at 41 °C under a 5% CO2 atmosphere. B cells were activated using recombinant soluble chicken CD40 ligand (chCD40L) [22 (link)], which was expressed in HEK293 cells and purified using a Vivacell 250 ultrafiltration concentrator (Sartorius; Göttingen, Germany).
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