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19 protocols using ab82411

1

Serum Protein Quantification and Analysis

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Total serum protein was quantified using a Pierce™ BCA protein quantification kit (Thermo, San Jose, CA, USA), and all samples diluted to 2 μg prot/µL. Samples were denatured in a 100 °C metal bath for 15 min with a protein loading buffer (Epizyme, Shanghai, China) for further analysis. Sodium dodecyl sulfate–polyacrylamide gel electrophoresis from 80 V to 120 V and electric transfer at 250 mA were performed after the addition of 2.5 μL marker (Fisher, San Jose, CA, USA) and 20 μg serum samples. Subsequently, membranes were blocked with a rapid blocking solution (Genefist, Oxfordshire, UK) for 10 min, eluted with TBST (Solarbio, Beijing, China), and incubated with primary antibodies specific for p-PI3K (1:1000, ab182651; Abcam), Akt (1:1000, 4691T; CST), p-Akt (1:1000, ab278565; Abcam), NF-κB p65 (1:1000, 8242T; CST), NF-κB p-p65 (1:1000, 3033S; CST) and transferrin (serum loading control, 1:10,000, ab82411; Abcam) overnight at 4 °C. Following re-elution with TBST, bands were incubated with a secondary antibody (1:5000, bs-40295G-HRP; Bioss) for 2 h. Finally, the strips were evenly coated with ECL developer solution (US Everbright, Suzhou, China) and visualized using the Tanon 5200 Multi fully automated chemiluminescence image analysis system (Tanon, Shanghai, China).
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2

Western Blot Analysis of Hepatic Proteins

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Cell samples were RIPA lysed buffer (P0013E, Beyotime) and protein concentration of the lysates was determined using the BCA kit (P0010S, Beyotime). Protein samples were separated by SDS-PAGE, transferred to PVDF membranes, and blocked in 10% milk in Tris-buffered saline. The membranes were then incubated at 4°C overnight in a 1:500 dilution of anti-human ALB (sc-271605, Santa Cruz), and then incubated in HRP-conjugated secondary antibody with a dilution of 1:3,000 for 2 h (BA1051, BA1055, Boster). Protein bands were visualized with an ECL kit (WBKLS0050, Merck Millipore). Data were analyzed using Image J 3.0. The gray ratio of ALB proteins and β-actin represented the relative level of the target protein. CPS1, TF, CYP3A4, CYP2D6 proteins were similarly detected by western blotting using their specific antibodies with the dilutions of 1:500, 1:10,000, 1:2,000, and 1:1,000, respectively (ab64613, ab82411, ab3572 Abcam, 93867s Cell Signaling Technology).
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3

Evaluation of Ferroptosis Markers in Cells

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Brucine, ferric ammonium citrate (FAC), and glutathione (GSH) were all purchased from Sigma-Aldrich (Saint Louis, MO, USA). Ferrostatin-1 (Fer-1), liproxastin-1, and 4-phenylbutyrate (4-PBA) were all obtained from Selleck Chemicals (Houston, TX, USA). Primary antibodies against GRP78 (ab12685), ATF3 (ab254268), ATF4 (ab184909), GPX4 (ab125066), cystine-glutamate antiporter xCT (ab175186), ferritin light chain (ab69090), ferritin heavy chain (ab75972), FPN (ab78066), TF (ab82411), TFR (ab1086), ATG5 (ab108327), LC3B (ab192890), p62 (ab109012), Beclin-1 (ab207612), superoxide dismutase 1 (SOD1) (ab51254), and catalase (ab209211) were all from Abcam (Cambridge, UK). Anti-PERK (#5683) and anti-β-Actin (#4970) antibodies were from Cell Signaling Technology (Beverly, MA, USA). The other reagents were purchased from Sigma-Aldrich.
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4

Quantitative Western Blot Analysis

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Total protein concentration in the plasma samples was determined using Pierce BCA Protein Assay (Thermo Fisher, Waltham, MA). General protein separation was carried out by electrophoresis on 4–20% gradient SDS-PAGE gels at 110 V for 1.25 h and transferred to nitrocellulose membranes (Bio-Rad Laboratories, Inc., Hercules, CA). Transfer membranes were then incubated in blocking buffer (1% BSA in TBST) at 4 °C under gentle agitation overnight. Blocked membranes were probed with primary recombinant monoclonal antibodies for trypsin (ab200997, 1:1000, Abcam, Cambridge, MA), pancreatic lipase (ab124915,1:30000, Abcam), and Transferrin (ab82411, 1:10,000, Abcam) before incubated in the corresponding secondary antibody (ab205718, 1/5000, Abcam). Membranes were incubated with Pico Chemiluminescent Substrate (Thermo Fisher Scientific) and then imaged via photo-sensitive autoradiography film (Genesee Scientific, San Diego, CA). Western blot images were digitally analyzed (gel analysis tool, Image J; NIH). The band density values for each of the western blots for trypsin and lipase were normalized to their respective transferrin values.
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5

AML-12 Co-culture and EV Uptake

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For co-culture experiments, AML-12 cells at a density of 2 × 105 cells per ml were cultured in a transwell system with a 0.4-μm porous membrane. For EVs uptake experiments, Raw264.7-derived EVs were labelled with the PKH67 Green Fluorescent Cell Linker Kit (Sigma Aldrich, St. Louis, MO, USA): EVs diluted in PBS were added to 1 ml Diluent C. In parallel, 4 μl PKH67 dye was added to 1 ml Diluent C and incubated with the EVs solution for 4 min. Then 2 ml 0.5% BSA/PBS was added and the labeled EVs were washed at 100,000 g for 1 h, the EVs pellet was diluted in 100 μl PBS and used for uptake experiments. The transferrin neutralized antibody (1:100, ab82411, Abcam, Cambridge, UK) was used to block the transferrin in hepatocytes.
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6

Quantifying ApoE Protein Levels in Plasma

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Example 90

For analysis of ApoE protein levels in plasma samples, 8 □g of plasma is separated by SDS-PAGE and transferred to a PVDF membrane. The membrane is blocked in 5% milk in PBS/0.1% Tween-20 (PBS-T) for 1 h at room temperature (RT), washed three times in PBS-T before incubation with primary antibodies against mouse ApoE (ab20874, Abcam), or human ApoE (ab1906, Abcam) and transferrin (ab82411). Transferrin is used to normalize the ApoE signal. The membrane is washed three times in PBS-T and blotted with secondary antibody (65612, Invitrogen) for 1 h at RT. Following three washes in PBS-T, the membrane is developed using ECL substrate (32106, Pierce) according to the manufacturers instructions.

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7

Urine Protein Western Blot Analysis

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Urine proteins were prepared as described in Materials and Methods; 20 µg of each sample were separated by 10% SDS-PAGE and transferred to PVDF membranes (Whatman, Maidstone, UK) in transfer buffer (10% methanol, 25 mM Tris base, 192 mM glycine, PH 8.0). Membranes were incubated overnight at 4 °C with primary antibody against alpha-1-antiproteinase (Species reactivity: rat; dilution 1:1000; ab106582, Abcam, Cambridge, UK) or transferrin (Species reactivity: rat; dilution 1:10000; ab82411, Abcam, Cambridge, UK). The membranes were then washed and incubated with peroxidase-conjugated anti-chicken and anti-rabbit IgG (1:10000; zSgb-Bio, Beijing, China) at room temperature for 2 h and proteins were visualized using enhanced chemiluminescence (ECL) reagents. Intensity of each protein band was quantified using Image J analysis software (National Institutes of Health, Bethesda, Maryland, USA).
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8

Western Blot Analysis of Plasma Proteins

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Plasma was mixed with 1:40 in PBS and thereafter diluted 1:1 with Laemmli sample buffer (62.5 mM Tris–HCl pH 6.8, 10% v/v glycerol, 1% v/v SDS, 0.005% w/v bromophenol blue, 355 mM 2-mercaptoethanol). The samples were loaded onto SDS-PAGE gels and then transferred to Immobilon-P polyvinylidene difluoride (PVDF) membranes (Millipore, MA, USA) Membranes were stained with Ponceau and cut into two pieces at 50 kDa. The membranes were washed and thereafter blocked in 10% w/v skim milk (SM) in Tris-buffered saline containing 0.1% v/v Tween-20 (TBST) for 60 mins at RT. After washes in TBST, the the membrane was cut in two and incubated with anti-mouse transferrin antibody (ab82411 Abcam) diluted 1:500 as a loading control or with anti-mouse ApoE (ab20874 Abcam) diluted 1:500 both in 0.5% w/v BSA/TBST overnight at 4°C. Membranes were washed three times in TBST for 10 min and incubated with fluorescently labelled secondary antibody 1:10000 in 5% v/v SM/TBST for 1h at RT. The membranes were washed three times for 10 min in TBST and proteins were visualized using Li-Cor Odyssey imaging system.
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9

Biotinylated Protein Quantification in Tissues

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Biotinylated protein levels in mouse tissues were assessed by immunoblotting. Tissue lysates were denatured at 95 °C for 5 minutes in 4X Laemmli sample buffer with 10% β-mercaptoethanol. Samples were loaded on Criterion™ TGX™ any KD gels and run in Novex® Tris-Glycine SDS running buffer. Samples were then transferred to Trans-Blot® Turbo™ Midi PVDF using the Bio-Rad rapid semi-dry system. After Ponceau S staining, membranes were blocked in 2% non-fat milk in Tris-buffered saline with Tween-20® for 1 hour at room temperature. Membranes were incubated overnight at 4 °C with the following primary antibodies at 1:5,000 dilution in blocking solution: Rabbit polyclonal anti-biotin (ab1227, Abcam), rabbit polyclonal anti-transferrin (ab82411, Abcam), rabbit polyclonal anti-BSA (A11133, ThermoFisher Scientific), rabbit polyclonal anti-GAPDH (ab9485, Abcam), rabbit polyclonal anti-beta tubulin (ab6046, Abcam). Goat anti-rabbit HRP secondary antibody or Pierce™ high sensitivity streptavidin-HRP antibody (21130, ThermoFisher Scientific) was added at 1:10,000 dilution in blocking solution and membranes were incubated for 1 hour at room temperature. Signal was visualized using SuperSignal™ West Dura Extended Duration Substrate or SuperSignal™ West Femto Maximum Sensitivity Substrate on HyBlot CL® film.
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10

Western Blot Analysis of Mouse Complement

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Mouse sera were diluted 500-fold in sample buffer and boiled before loading on gels. Blotting was performed overnight at 4 degrees with the following antibodies: 0.4 μg/ml rabbit anti-C3 (Abcam ab200999), 0.1 μg/ml goat anti-MBL1 (R&D Systems AF2077), 0.1 μg/ml goat anti-MBL2 (R&D Systems AF2208), and 0.4 μg/ml rabbit anti-Transferrin (Abcam ab82411). Proteins were then detected by incubation for 1 hour at room temperature with horseradish peroxidase coupled secondary antibodies at 0.1 μg/ml, using either goat anti-rabbit IgG (Southern Biotech 4050) or donkey anti-goat IgG (Southern Biotech 6420). All antibodies were diluted in tris buffered saline with 3% bovine serum albumin. Bands were detected on film with ECL Pro reagent (Perkin Elmer).
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