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Phenylmethanesulfonyl fluoride pmsf

Manufactured by Merck Group
Sourced in United States, China

Phenylmethanesulfonyl fluoride (PMSF) is a chemical compound commonly used as a protease inhibitor in laboratory research. It functions by irreversibly inhibiting serine proteases, which are enzymes that cleave peptide bonds. PMSF is a versatile tool employed to preserve the integrity of protein samples during extraction and analysis.

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77 protocols using phenylmethanesulfonyl fluoride pmsf

1

Fibrinolytic Enzyme Characterization

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The fibrinolytic enzyme type was determined by evaluating the effects of multifarious inhibitors on the fibrinolytic activity. Briefly, the purified enzyme solution (50 IU/ml) was pre-incubated at 37 °C for 30 min separately with each of the following inhibitors: 5.0 mM serine protease inhibitor phenylmethanesulfonyl fluoride (PMSF; Sigma, Beijing, China), 5.0 mM metalloprotease inhibitor ethylene diamine tetraacetic acid (EDTA; Sigma, Beijing, China), 10 µM aspartic protease inhibitor pepstatin A (Sigma, Beijing, China), 1.0 mM cysteine protease inhibitor trans-epoxysuccinyl-L-leucylamido-(4-guanidino) butane (E64; Sigma, Beijing, China), and 1.0 mM aminopeptidase inhibitor bestatin (Sigma, Beijing, China). To measure the effects of metal ions on the activity, the fibrinolytic enzyme (50 IU/ml) was pre-incubated separately with different metal ions (final concentration 5 mM) at pH 7.5 and 37 °C for 30 min. The enzyme solution without added ions was used as a control.
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2

Western Blot Analysis of BCL11A in iEPCs

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Whole-cell lysates from iEPCs were prepared using radioimmunoprecipitation assay (RIPA) buffer (150 mM sodium chloride, 1% Triton X-100, 0.5% sodium deoxycholate, 0.1% SDS, and 50 mM Tris, pH 8) containing Halt Protease Inhibitor Cocktail (Thermo Scientific, Rockford, IL, USA) and phenylmethanesulfonyl fluoride (PMSF) (Sigma Aldrich, St. Louis, MO, USA). The lysates were quantitated using the Bradford Reagent (Biorad Inc., Richmond, CA, USA). A total of 30 μg of the lysate was loaded on a 7% sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) gel and analyzed by western blot using primary antibodies, anti-BCL11A (1:1000 dilution) (Cell Signaling Technologies, Danvers, MA, USA), and anti-actin (1:5000 dilution) (BD Pharmingen, San Jose, CA, USA) and secondary antibodies, anti-mouse IgG HRP (Cell Signaling Technologies, Danvers, MA, USA) and anti-rabbit IgG HRP (Invitrogen Corporation, Camarillo, CA, USA). The signal was detected using the Westar Supernova (Cyanagen, Bologna, Italy) and FluorChemE gel documentation system (Protein Simple, San Jose, CA, USA).
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3

Isolation of Lipid Rafts from RAW 264.7 Cells

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Lipid rafts from RAW 264.7 cells were isolated as described previously [25 (link),26 (link)]. Briefly, cells were washed with ice-cold PBS, scraped in 2 mM EDTA/PBS, centrifuged (500× g, 5 min, 4 °C), and incubated on ice for 30 min in 600 μL lysis buffer (150 mM NaCl; 25 mM MES; 5 mM EDTA, pH 6.5; 1% Triton X-100) supplemented with a cocktail of protease inhibitors (Sigma-Aldrich, Burlington, MA, USA) and phenylmethanesulfonylfluoride (PMSF; Sigma-Aldrich, Burlington, MA, USA). Samples were homogenized by passing through a 25⅝ G needle. The homogenate was centrifuged (8000× g, 5 min, 4 °C) and supernatant was adjusted to a final concentration of 40% (w/v) iodixanol (OptiPrep®, Sigma-Aldrich, Burlington, MA, USA), and the mixture was then layered under a 20–40% discontinuous iodixanol gradient and centrifuged at 260,000× g for 16 h at 4 °C using an SW 41 Ti Rotor (Beckman Coulter, Brea, CA, USA). Then, 11 fractions of 1 mL were collected from the top to the bottom of the gradient tube, and Western blot analysis of the fractions was performed. Lipid raft fractions were defined by the presence of a raft marker, flotilin 2 [27 (link)], while TfR1 was considered as a marker of non-lipid raft domains [28 (link)].
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4

Preparation and Use of TCS Compound

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TCS (99%; Sigma-Aldrich) was freshly prepared each day in aqueous Tyrodes buffer as described in (Weatherly et al., 2013 (link)) and was used at non-cytotoxic doses (Palmer et al., 2012 (link)). 5-Fluoro-2-indolyl des-chlorohalopemide (FIPI)(Calbiochem) was dissolved in 100% DMSO to obtain 1 mM stock. Further dilutions were made in bovine serum albumin (BSA)-Tyrodes (BT) buffer to make 75nM (0.0075% DMSO) and 150 nM (0.015% DMSO). Phenylmethanesulfonyl fluoride (PMSF; Sigma) was dissolved in 100% ethanol to be 200 mM and was stored at −20 °C.
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5

Murine and Human Gut Content Supernatants

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Cecal content/stool-supernatants (cecal-sup/stool-sup, 10% wt/vol) were generated from the cecal contents of WT, IL10-/- mice, or patient stool. A total of 100 mg of patient stool or murine gut contents from the ileum, cecum, colon, or feces were homogenized and dissolved in sterile phosphate-buffered saline (PBS, 10% wt/vol) using sterile glass beads and vigorous vortexing. Supernatant was generated by a 2-step centrifugation (5 min, 1000 rpm, 4°C) followed by centrifugation of the resulting supernatant (10 min, 6000 rpm, 4°C). Whenever indicated, the supernatants were incubated with the serine protease inhibitor phenylmethane-sulfonylfluoride (PMSF; 5 mM; Sigma-Aldrich). The supernatants were stored at -20°C.
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6

Purification of Nickel-Binding Proteins

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Nickel (Ni) Sepharose 6 FF and DEAE Sepharose FF were obtained from Pharmacia Biotech Inc. (Piscataway, NJ, USA). Phenylmethanesulfonyl fluoride (PMSF) and imidazole were purchased from Sigma (St. Louis, MO, USA). Peptone was purchased from OXOID (Basingstoke, Hampshire, UK), and yeast extract was purchased from Angel Yeast (Angel Yeast Co., Ltd, Yichang, China). Other reagents used in this research were analytical reagent grade or the highest grade commercially available.
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7

PLGA Polymer Characterization and Cell Assays

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PLGA copolymer (50:50 lactide–glycolide ratio; inherent viscosity 1.32 dL/g at 30°C) was purchased from Birmingham Polymers (Pelham, AL). Propidium iodide (PI), MTS [3-(4,5-dimethylthiazol-2-yl)-5-(3-carboxymethoxyphenyl)-2-(4-sulfophenyl)-2H-tetrazolium, inner salt)], Phenylmethanesulfonyl fluoride (PMSF), fetal bovine serum, eukaryotic protease inhibitor cocktail, and pyruvic acid were purchased from Sigma–Aldrich Co. (St. Louis, MO) or Fisher Scientific (Pittsburgh, PA). All chemicals and reagents were used without further purification. Mouse anti-human monoclonal antibodies to MUC1 and rabbit anti-human antibodies to HER2, Cytokeratin 19, p27, PTEN, Cyclin D1, p-Akt, Survivin, Bax, and Caspase-3 were purchased from Cell Signaling Laboratory. The rabbit anti-human antibody to CD31 was purchased from Abcam (Cambridge, MA). The anti-mouse IgG HRP and rabbit IgG HRP-linked secondary antibodies were procured from Promega (Madison, WI). The hematoxylin stain was purchased from Fisher Scientific and the Annexin V/FITC apoptosis kit from Bio-Rad (Hercules, CA).
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8

Protease inhibition assay for Blastocystis

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Protease inhibition assay was carried out to investigate the type of the most prevalent protease present among Blastocystis sp. isolated from SZ group according to previous studies [39 (link), 40 (link)]. The protease activity of cysteine, serine, aspartic, and metalloprotease was measured using optimised concentration of protease inhibitors E-64 (0.1 mM) (Sigma-Aldrich, MO, USA), phenylmethanesulfonylfluoride (PMSF) (1 mM) (Sigma-Aldrich), iodoacetamide (Sigma-Aldrich), and EDTA (metalloprotease inhibitor) (1 mM) (Sigma-Aldrich), respectively. A volume of 100 µl of antigens (0.1 mg/ml) with different protease inhibitors was incubated with azocasein (5 mg/ml) for 1 h at 37 °C. The resultant mixture was treated with trichloroacetic acid, ice incubation, and treatment of NaOH (500 mM) following the protocol from the previous section. Percentage of protease activity inhibition after the addition of different inhibitors was calculated using the formula: Percentageofproteaseinhibition=P-PiC100 where P: protease activity of cell lysate without inhibitors, Pi: protease activity after addition specific inhibitor azocasein as a substrate.
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9

Cell Lysis and Protein Extraction

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Cells were harvested by treating them with 0.25% trypsin and washing them three times with PBS by centrifugation at 1000g for two minutes. The packed cells were then lysed with a double volume of lysis buffer [7 M urea, 2 M thiourea, 4%3-((3-Cholamidopropyl) dimethylammonio)-1-propanesulfonate (CHAPS), 40mM Tris-Hcl, 65mM dithiothreitol (DTT), 2% pharmalyte, 1mM phenylmethanesulfonyl fluoride (PMSF)] (Sigma, St Louis, MO, USA) for one hour at room temperature, and centrifuged at 1000g for one hour at 4°C. Protein concentrations were determined using the Bradford protein assay. All of the samples were stored at−80°C prior to electrophoresis.
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10

Standardized Fungal Antigen Preparation

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The TM CYA preparation was performed as described (Prakit et al., 2016 (link)). Briefly, T. marneffei conidia were inoculated into brain heart infusion (BHI) broth (Becton Dickinson, Sparks, MD, USA) and cultured for 6 days at 37°C, 150 rpm. After treatment with 0.02% (w/v) Merthiolate (Sigma, Poole, UK) at room temperature for 12 h, the yeasts were centrifuged for 10 min at 2,300 g and the cell walls were mechanically broken with 0.5-mm glass Ballotini beads (BioSpec, Bartlesville, OK, USA) in a bead beater homogenizer (BioSpec, Bartlesville, OK, USA). A cocktail of protease inhibitors including iodoacetic acid (IAA; 10 μM; Sigma), phenylmethanesulfonyl fluoride (PMSF; 0.1 mM; Sigma), and 1 mM ethylene diamine tetraacetic acid (EDTA), was added to prevent fungal protein degradation. The mixture was centrifuged for 30 min at 4°C at 10,000 g, and the total antigen was collected. The antigens of other fungi were prepared following the same standardized procedure. The fungal strains used in the current study are listed in Table 2.
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