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16 protocols using p ikkα

1

Molecular Profiling of CRC Cells

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Western blotting was performed as previously described17 . In brief, the whole-cell or nuclear extracts from CRC cells and tumor samples were prepared according to a standard protocol. Then, the samples were subjected to 10% sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) for separation. Afterwards, the separated samples were transferred onto the polyvinylidene difluoride (PVDF) membranes (Millipore, CA). Later, the membranes were blocked with 5% milk and incubated with the following primary antibodies, including p65 and p-p65 (Santa Cruz Biotechnology, CA, USA), cyclin D1, VEGF, Bcl-2, Survivin, Ki67 (Abcam, Cambridge, UK), cleaved Caspase-3, p-IKK-β, and p-IKK−α (Cell Signaling, MA, USA) antibodies, at 4 °C overnight, followed by incubation with secondary antibodies. Finally, the proteins were visualized using the ECL detection reagent.
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2

Molecular Mechanisms of Anti-Inflammatory Effects

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Phorbol 12-myristate 13-acetate (PMA), lipopolysaccharide (LPS), monosodium urate (MSU), and colchicine were purchased from Sigma-Aldrich (St. Louis, MO, USA). Neoastilbin (purity ≥ 98%) was purchased from Sichuan Victory Biological Technology Co., Ltd. (Chengdu, China). Fetal bovine serum (FBS) was purchased from Gibco (Scoresby, Australia). Penicillin–streptomycin solution was purchased from HyClone (Logan, UT, USA). Cell Counting Kit-8 (CCK-8) was purchased from Biosharp Life Sciences (Beijing, China). Enzyme-linked immunosorbent assay (ELISA) kits for interleukin-1β (IL-1β), interleukin-6 (IL-6) and tumor necrosis factor-α (TNF-α) were purchased from MEIMIAN (Shanghai, China). NLRP3, ASC, Caspase-1, NF-κB p-p65, NF-κB p65, p-IKKα, IKKα, p-IκBα, IκBα, β-actin and Histone H3 antibodies were purchased from Cell Signaling Technology (Boston, MA, USA).
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3

Venenum Bufonis Characterization and Biological Evaluation

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Venenum Bufonis was purchased from Anhui Province and authenticated by Professor De-an Guo (Shanghai Institute of Materia Medica, Chinese Academy of Sciences). The voucher specimens were deposited at the Shanghai Research Center for Modernization of Traditional Chinese Medicine, Shanghai Institute of Materia Medica. The major constituents of VB were qualitatively and quantitatively analyzed, as shown in the supplementary information (see supplementary Fig. S1 and supplementary Table S1 online). TNF-α, IL-6, and IL-1β enzyme-linked immunosorbent assay (ELISA) kits were supplied by Nanjing KeyGEN Biotech. Co., Ltd. (Nanjing, China). CK-MB, CK, AST, ALT, MDA, SOD, CAT, GSH, and GPx kits were purchased from Jiancheng Bioengineering Institute (Nanjing, China). Primary antibodies against TXNIP, TRX, p-NF-κBp65, NF-κBp65, p-IκBα, IκBα, p-IKKα, IKKα, p-IKKβ, and IKKβ, p-ERK, ERK, p-JNK, JNK, p-P38, and P38 antibodies were produced by Cell Signaling Technology (Danvers, Massachusetts, USA).
All other chemicals and reagents used in the studies were of analytical grade and were purchased from approved organizations.
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4

Plumbagin Modulates Inflammatory Pathways

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Plumbagin was purchased from Sigma–Aldrich (St. Louis, MO, USA). Primary antibodies against MMP-2, MMP-9, cleaved caspase-3, Bcl-2, Bax, β-actin, Bad, Bcl-xL were procured from Abcam, USA. TNF-α, NF-κBp65, IκBα, p-IκBα, p-IKKα, IKKα p-IKKβ, IKKβ, and horseradish peroxidase-labeled IgG secondary antibodies were procured from Cell Signaling Technology Inc. (Danvers, MA, USA). ELISA kits for determination of cytokines -TNF-α, IL-1β and IL-6 were obtained from Biolegend (San Diego, CA, USA). Cell lysis buffer for Western blotting analysis was purchased from Beyoime Institute of Biotechnology (Beijing, China). All the other chemicals used for analysis were from Sigma–Aldrich, if otherwise are specified.
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5

Western Blotting Analysis of Liver Proteins

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Liver homogenates containing 30 μg of whole cell lysate protein or 10 μg of nuclear protein were separated by 10 or 12% SDS-PAGE and transferred to PVDF membranes. After blocking with 5% skim milk, the blot was probed with primary antibodies for p50, p65, IκBα, IKKα, IKKβ, PCNA and β-actin (Santa Cruz Biotechnology, Santa Cruz, CA, USA), and cleaved caspase-3, Bcl-2, Bax, p-IKKα and p-IKKβ (Cell Signaling Technology, Beverly, MA, USA). Horseradish peroxidase-conjugated anti-rabbit or anti-mouse IgG (Santa Cruz Biotechnology) was used as a secondary antibody.
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6

Cellular Signaling Pathway Assay

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Dulbecco’s Modified Eagle medium (DMEM)/F-12 1:1 Modified medium (DMEM/F-12) was purchased from Lonza (Walkersville, MD, USA). Antibodies against ATF3, poly (ADP-ribose) polymerase (PARP), p-ERK1/2, total-ERK1/2, p-p38, total-p38, p-JNK, total-JNK, p-GSK3β, total-GSK3β, p-IKKα, total-IKKα, and β-actin were purchased from Cell Signaling (Beverly, MA, USA). PD98059 (ERK1/2 inhibitor), SB203580 (p38 inhibitor), SP600125 (JNK inhibitor), LiCl (GSK3β inhibitor), and BAY11-7082 (IKKα inhibitor) were purchased from Calbiochem (San Diego, CA, USA). ATF3 siRNA was purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA). ATF3 promoter constructs used in this study were kindly provided by Seong Ho Lee (University of Maryland, College Park, MD, USA). All chemicals were purchased from Fisher Scientific, unless otherwise specified.
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7

Western Blot Analysis of Immune Signaling Pathways

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10 or 12% SDS-PAGE were used to separate RAW264.7 lysates and proteins were transferred to polyvinylidene fluoride membrane. p65, p-p65, IKKα, p-IKKα, p53, Erk1/2, p-Erk1/2, p38, p-p38, Caspase3, iNOS, GAPDH, and tubulin antibodies were purchased from Cell Signaling Technology. FLAG antibody was from Sigma. MptpB antibody was produced in our lab. The secondary antibodies were HRP-conjugated anti-mouse or anti-rabbit IgG (Southern-Biotech).
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8

TLR4-NF-κB Signaling Pathway Analysis

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Tissues and cells were homogenized in 10% (wt/vol) hypotonic buffer (25 mM Tris-HCl, pH 8.0, 1 mM ethylenediaminetetraacetic acid, 5 μg/mL leupeptin, 1 mM Pefabloc SC, 50 μg/mL aprotinin, 5 μg/mL soybean trypsin inhibitor, 4 mM benzamidine) to yield a homogenate. Then, the final supernatants were obtained by centrifugation at 12,000 rpm for 20 min. Protein concentration was determined using BCA protein assay kit (Thermo Fisher Scientific, Waltham, MA, USA) with bovine serum albumin as a standard. Then, the same amount of total protein was subjected to 10% or 12% sodium dodecyl sulfate polyacrylamide gel electrophoresis followed by immunoblotting using the following antibodies (1:1,000): rabbit anti-TLR4, p-IkBα, p-IKKα, p-NF-κB, NF-κB, SOD1/2, XO, Nrf2, Keap1, HO-1, GAPDH (Cell Signaling Technology, Inc., Massachusetts, MA, USA), and NQO1 (Abcam). Western blot bands were observed using GE Healthcare ECL Western Blotting Analysis System and exposed to X-ray film of Kodak. Every protein expression level would be defined as the gray value (Version 1.4.2b, Mac OS X, ImageJ; National Institutes of Health, Bethesda, MD, USA) and standardized to housekeeping genes (GAPDH) and expressed as a fold of control.
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9

HaCaT Keratinocyte Culture and Signaling

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Human skin keratinocytes, HaCaT cells, were obtained from the American Type Culture Collection (USA) and maintained Dulbecco’s modified essential medium containing 10% fetal bovine (Thermo Fisher Scientific, Waltham, MA, USA), 1 mM sodium pyruvate, 0.1 mM nonessential amino acids, 100 units/mL penicillin, and 100 μg/mL streptomycin. Diphenyliodonium (DPI), N-acetyl-L-cysteine (NAC), and z-DEVD-fmk were purchased from Sigma-Aldrich. FAK inhibitor (FAKi; PF-562,271) was obtained from MedKoo (Chapel Hill, NC, USA). Orange CM-H2TMRos and 2′,7′-dichlorodihydrofluorescein diacetate (H2DCFDA) and MitoTracker Orange CM-H2TMRos were purchased from Invitrogen (Carlsbad, CA, USA). Antibodies against FAK (Millipore, Burlington, MA, USA), pY397 FAK (Invitrogen), ERK, p-ERK, p-JNK, p-p38, p-IKKα, cleaved caspase-3, PARP (Cell Signaling, Danvers, MA, USA), and GAPDH (Millipore) antibody were obtained.
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10

Protein Expression Analysis of T24R2 Cells

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After 48 h of treatment with NVP-BEZ235 (0.5 μM) and/or cisplatin (0.5 μg/ml), protein was extracted from T24R2 cells using RIPA buffer, fractionated by SDS-PAGE, transferred to PVDF membrane, and incubated with the corresponding primary antibodies [cyclin A, cyclin B1, cyclin D1, CDC2C, p-CDC2C (Tyr15), CDC25C, p-CDC25C (Ser216), pRb (Ser807/811), cleaved cleaved caspase (-3, -8 and -9), cleaved PARP, cIAP1, cIAP2, XIAP, survivin, p-IKKα (Ser176/180), IKKα, p-IκBα (ser32), IκBα, NF-κB, p-Akt (ser473), Akt, p-PI3K (Tyr199/458), PI3K, p-mTOR (Ser2448), mTOR, p-p70S6K (Thr389), p70S6K, p-GSK-3β (Ser9), GSK-3β, p-4E-BP1 (Thr37/46), 4E-BP1, p-MEK1/2 (Ser217/221), MEK1/2, p-ERK1/2 (Thr202/Tyr204), and ERK1/2; Cell Signaling Technology, Danvers, MA, USA; Bcl-2, Bax and Bad; Santa Cruz Biotechnology, Santa Cruz, CA, USA] and secondary antibodies before signal detection with an enhanced chemiluminescence Western blot substrate kit (Pierce, Rockford, IL, USA).
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