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8 protocols using waters acquity uplc hss t3

1

Quantification of Vitamin C in Pepper

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The UPLC-PDA system (WATERS Acquity H-Class, Milford, MA, USA) was used to detected L-ascorbic acid [60 (link)]. 0.5 g grounded (IKA A11 basic, IKA- Labortechnik, Staufen, Germany) pepper was mixed with 35 mL extraction solution (3%meta-phosphoric acid, 8% acetic acid, 1 mM EDTA—VWR Chemicals BDH Prolabo, Leuven, Belgium), 10 min vortexed and centrifuged (5 min, 6000 rpm). Supernatant was filtered through 0.22 μm polytetrafluoroethylene (PTFE) syringe filters. 1 mL solution was added to 1 mL eluent and injected (5 µL). Separation was performed using an WATERS Acquity UPLC HSS T3 (2.1 × 100 mm, 1.8 μm; Waters, Ireland) with pre-column BEH C18 (2.1 × 5 mm, 1.7 µm; Waters, Ireland). Mobile phase (Milli-Q water with 0.1% (v/v) formic acid) flow was 0.25 mL/min. Column thermostat temperature was 25 °C and the samples were kept at 4 °C. The spectrum at wavelength 245 nm was analyzed. Vitamin C content was calculated in relation to the calibration curve prepared for the L-ascorbic acid (VWR Chemicals BDH Prolabo, Leuven, Belgium) analytical standard (0.005–0.100 mg/mL). The analysis was performed in triplicate.
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2

Tryptophan Metabolomics in Mouse Feces

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Tryptophan-targeted metabolism in mouse feces was analyzed according to a previous study [36 (link)]. Mice feces were accurately weighed (50 mg), and then 500 μL of extraction solution (methanol/acetonitrile/water = 2:2:1, pre-cooled at −40 °C, with 0.1% formic acid and an internal standard of isotope labeling) was added. The mixture was vortexed for 30 s and sonicated for 5 min in an ice-water bath (SB 25-12 DTDN, Scientz, Ningbo, China). This ultrasound-assisted extraction was repeated twice. Subsequently, the samples were left to rest at −40 °C for 1 h, followed by centrifugation (13,523× g, 15 min, 4 °C). A volume of 320 μL of the supernatant was transferred, dried under nitrogen gas, redissolved in 80 μL of an aqueous solution containing 0.1% formic acid, and then centrifuged at 13,523× g at 4 °C for 15 min. The supernatant was analyzed by ultra-high performance liquid chromatography-tandem mass spectrometry (UHPLC-MS/MS) (Thermo Fisher Scientific, Waltham, MA, USA). Chromatographic separation was performed on a column (Waters ACQUITY UPLC HSS T3, 100 mm × 2.10 mm, 1.8 μm, Waters, Milford, MA, USA) maintained at 40 °C. The autosampler temperature was set at 4 °C and the injection volume was 5 μL. Analytes were eluted using a gradient of 0.1% formic acid in water (solvent A) and 0.1% formic acid in acetonitrile (solvent B).
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3

UPLC-MS/MS Analytical Protocol

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An AB triple TOF 5600/6600 mass spectrometer (AB SCIEX), an Agilent 1290 infinity LC ultra‐high‐pressure liquid chromatography (Agilent) and a low‐temperature high‐speed centrifuge (Eppendorf 5430R) were used. The chromatographic columns used were a Waters Acquity UPLC BEH Amide 1.7 μm, 2.1 × 100 mm and a Waters Acquity UPLC HSS T3 1.8 μm, 2.1 × 100 mm. The solvents were acetonitrile (Merck, no. 1499230‐935) and acetic acid (Sigma, 70221).
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4

Ultrahigh-pressure LC-QTOF-MS Analysis

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The samples were analyzed using an Agilent 1290 ultrahigh pressure liquid chromatography system (Agilent, Waldbronn, Germany) equipped with a 6550 iFunnel Q-TOF mass detector managed by a MassHunter Workstation, as previously described.48 (link),49 (link) A Waters ACQUITY UPLC HSS T3 (2.1 × 100 mm, 1.8 μm; Waters, Milford, MA, USA) column was used with a Waters ACQUITY HSS T3 1.8 μM VanGuard guard column. The column temperature was 50°C. The separation was performed under a gradient elution which involved a mobile phase consisting of (A) 0.1% formic acid in water and (B) 0.1% formic acid in methanol. A linear gradient from 0% B to 95% B was applied for 2 min and was held for 5 min and then returned to the initial condition over 1 min. Two μL of samples was injected with a flow rate of 0.4 mL/min. For MS, the electrospray ionization mass spectra were acquired in positive ion mode and collected between m/z 50 and 1,700 at a rate of two scans per second. The ion spray voltage was set at +3,500 V and the capillary temperature was maintained at 350°C. Drying gas was set with a flow rate of 12.0 L/min and the pressure of nebulizer nitrogen was 50 psi. The total analysis time is 17 min.
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5

UHPLC-Q-TOF/MS Analysis of Samples

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For UHPLC-Q-TOF/MS analysis, we used Agilent 1290 Infinity LC system coupled with Agilent 6545 accurate mass quadrupole time-of-flight (Q-TOF) mass spectrometer (Agilent, Lexington, MA, USA). Chromatographic column was Waters ACQUITY UPLC HSS T3 analytical column (2.1 mm × 100 mm, 1.8 μm, Waters, Milford, Massachusetts) at 40 °C. The sample chamber temperature was 4 °C. The mobile phase in this experiment was acetonitrile (0.1% formic acid) (eluent A) and water (eluent B) (VH2O: VACN = 95:5, 0.1% formic acid). The flow rate was 0.4 L/min, the injection volume was 5 μL. The real samples were randomized before measurement. QC samples were injected between the real samples after every eight runs. Elution gradient was set in 0–2 min: 0–0% (A); 2–5 min: 0–50% (A); 5–13 min: 50–85% (A); 13–14 min: 85–95% (A); 14–15 min: 95% (A). Both positive and negative ion modes were selected for mass spectrometric conditions. The key parameters were set as follows: mass range was set between 100 and 1100 m/z; fragmentation voltage was set as 120 V; gas temperature was set at 350 °C; the flow rate of drying gas was 11 L/min; nebulizer was set as 45 psig, The capillary voltage was 3.5 kV in positive ion mode and 3.2 kV in negative ion mode.
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6

Extraction and Analysis of Nucleosides from Cicada

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Nucleoside extracts from C. cicadae were prepared as previously reported.34 (link)
C. cicadae powder (0.2 g) was screened with a 60-mesh sieve and mixed with 10 mL of 10% (v/v) methanol. The supernatant was obtained through ultrasonic ice bath (KH-400KDB Ultrasonic Cleaner, Kunshan Ultrasonic Instrument Co., Ltd., Kunshan, China) at 40 kHz for 2 hours and centrifuged (ST16R high-speed refrigerated centrifuge, Thermo Fisher Scientific) at 5,000 rpm for 15 minutes. The residue was re-extracted twice, and the resultant supernatant was centrifuged with constant stirring at 13,000 rpm for 10 minutes. Chromatographic separation was performed on a QTRAP 5500 LC-MS/MS system (AB SCIEX Co., Ltd., Boston, MA, USA). Compounds were separated by using an ultrahigh-performance liquid chromatography (UPLC) column (50×2.1 mm, 1.8 µm, Waters Acquity UPLC HSS T3, Waters Co., Ltd., USA). The mobile phase composed of water (A) and acetonitrile (B) was obtained with the following gradient elution conditions: 0.01–3 minutes (99:1–96:4), 3–5 minutes (96:4–70:30), 5–6 minutes (70:30), 6–6.01 minutes (70:30–99:1), and 6.01–7 minutes (99:1). The column temperature was 25°C, the flow rate was maintained at 0.4 mL/min, the temperature in the autosampler was set at 15°C, and the injection volume was 10 µL.
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7

UPLC-MS/MS Analytical Protocol

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Chromatography was performed on 1290 Infinity Binary LC System from Agilent together with Waters Acquity UPLC HSST3 1.8μm 2.1 × 100 mm column in connection with a Water Acquity UPLC HSS T3 1.8μm VanGuard Pre-column. Mass spectrometry was performed using Agilent Technologies 6530 Accurate-Mass Q-T of with a dual ASJ ESI ion source.
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8

UPLC-Q-TOF/MS Analysis of GJLZ Decoction

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The composition of the GJLZ decoction was analyzed by UPLC-Q-TOF/MS. The ultra-high-performance liquid chromatography (UPLC) system was Waters H-Class UPLC system (Waters Corporation, Milford, MA, USA), the chromatographic column was a Waters ACQUITY UPLC® HSS T3 (2.1 × 150 mm, 1.8 µm, Waters Corporation, Milford, MA, USA), and the column temperature was 30 °C. The sample injection volume was 2 μL. The mobile phase was an aqueous solution of acetonitrile (A) and 0.1% formic acid (B); the DAD wavelength ranged from 190 to 400 nm. The flow rate was 0.3 mL/min. The gradient elution program is exhibited in Table S1.
The AB Sciex Triple TOF® 4600 system (AB SCIEX LLC, Framingham, MA, USA) with an ESI ion source was used to perform MS analysis. Samples were analyzed in negative and positive ion modes; the parameter set is shown in Table S2.
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