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61 protocols using ts2r fl

1

Immunostaining Protocol for URAT1 and GLUT9

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Cells were washed with PBS, and were then fixed with 4% paraformaldehyde for 20 min at room temperature. After washing with PBS, cells were permeabilized with 0.1% Triton X-100 for 15 min at room temperature. HK-2 cells were washed with PBS and were incubated in blocking buffer for 2 h at room temperature. Cells were probed at 4 °C overnight with the primary antibody against URAT1 or GLUT9. Cells washed with PBS were incubated with an FITC-conjugated secondary antibody for 1 h at room temperature. Following washing with PBS, Hoechst 33342 was used to stain nuclei for 20 min at room temperature. After washing with PBS, fluorescence was examined with a fluorescence microscope, Ts2R-FL (Nikon, Tokyo, Japan).
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2

Visualizing Cell Morphology with AECR Treatment

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The cells were planted on 6-well plates at 3 × 104 cells/mL for 4 days with or without AECRs (200, 300, and 400 µg/mL). Following three PBS washes, the cells were fixed for 12 min with 4% paraformaldehyde. Then, following three washes with PBS, the cells were coated on glass slides, dried, permeabilized for five minutes with 0.1% Triton X-100, and then slowly washed with PBS for 3–5 times. Next, the cells were treated with 200 μL of TRITC phalloidin fluid (CA1610) for 1 h at room temperature without light. Cell nuclei were stained for five minutes at room temperature with DAPI (C0065) after three rounds of washing, slowly. Finally, images were immediately collected under an inverted fluorescence microscope (Nikon Ts2R/FL, Japan).
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3

Cell Proliferation Assay using EdU

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Cell proliferation was assessed by the Cell-Light™ EdU DNA cell proliferation kit (RiboBio ) according to the instructions from the manufacturer. In brief, after treatment with PPI, the PC9 and H1650 cells were exposed to 50 μM of 5-ethynyl-2ʹ-deoxyuridine (EdU) for 2 h at 37 °C, and then fixed in 4% PA–PBS for 30 min. After permeabilization with 0.5% Triton X-100, the cells were stained with 1×Apollo reaction reagent followed by staining with Hoechst 33342. Finally, the pictures were obtained with 200× magnification under microscopy (Ts2RFL; Nikon, Tokyo, Japan). At least five captured fields were randomly selected and the EdU positive cells were calculated: (EdU positive cells/Hoechst stain cells)×100.
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4

Cell Proliferation Assessment via EdU Labeling

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Cell proliferation was assessed after cell transfection. EdU solution (1:1000) was added to the cell culture and incubated for 4 h. The SCs were then fixed with 4% PFA for 30 min. After SC labeling, a Cell-Light EdU DNA Cell Proliferation Kit (C10310, Ribobio) was used to analyze cell proliferation according to the manufacturer’s protocol. Cell proliferation was shown as the ratio of EdU-positive cells, which was quantified with images of randomly selected on a DMR fluorescence microscope (Ts2R-FL, Nikon, Japan).
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5

Cell Migration Assay Protocol

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Transfected cells were cultivated in 6-well plates until they reached 80%–90% confluence. After the medium was discarded, confluent cells were scratched using a 10 μL tip, washed with serum-free medium, and incubated for 24 hours. Migration was measured by counting the migrating cells under an inverted microscope at 100× magnification (Ts2r-FL; Nikon).
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6

Transwell Assay for Cell Invasion

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Cell invasion of 5-8F and 6-10B cells was assessed by Transwell chambers (8-μm pores, Corning Inc., Corning, U.S.A.) coated with Matrigel gel (BD Biosciences, San Jose, CA). The 5-8F and 6-10B cells (1 × 105/cells) were cultivated into the upper chambers of Transwell (Corning Inc., Corning, U.S.A.), which contained 200 μl DMEM, while 500 μl DMEM medium containing 10% FBS was added into the lower wells as the primers. After 48 h at 37°C, 5-8F and 6-10B cells remaining in the upper surface were scraped off by a cotton swab, while those migrated into the lower surface were fixed by 4% pre-cold methanol for 15 min, and stained by 0.1% Crystal Violet solution (Sigma-Aldrich) for 20 min at room temperature. The cells were counted from a minimum of 10 fields per filter under a 200× microscope (Ts2r-FL, Nikon, Japan).
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7

Pseudovirus Infection Assay in ACE2-Expressing HEK293T Cells

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About 104 ACE2-expressing HEK293T cells were seeded into a 384-well plate for culturing for at least 12 h. Then, different types of pseudoviruses with the same particle concentration were separately added to infect ACE2-expressing HEK293T cells. After 8 h co-incubation with pseudovirus, the culture medium was replaced with fresh medium, and cells were cultured for an additional 48 h. Finally, after imaging with a fluorescence microscope (Nikon Ts2R-FL), the infection efficiencies were evaluated by counting the infectious cells.
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8

Quantifying H2O2 and Callose in Rice

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The rice leaves were stained with 1 mg/mL 3,3′-diaminobenzidine (DAB) (Biotopped) solution overnight at 28°C. After incubation with DAB, leaves were fixed and cleared in absolute alcohol with frequent changes of the fresh solution, and then the red-brown precipitate formed by polymerized DAB in the presence of H2O2 was examined under a stereomicroscope (MZ62+MSX1; Mshot, Guangzhou, China). Triplicate samples were performed for each treatment. For the callose deposition assay, the rice leaves were fixed and cleared in absolute alcohol with frequent changes of fresh solution, and the chlorophyll was removed. The transparent leaves were washed with 70 mM sodium phosphate buffer three times and then incubated in stain solution (70 mM sodium phosphate buffer; 0.01% aniline blue) (Macklin) for 2 h in the dark. Then, the leaves were observed using an inverted microscope under UV light (340 to 380 nm) (TS2R-FL; Nikon, Tokyo, Japan). The abundance of H2O2 accumulation and callose intensities are represented as the percentages of relative DAB and callose intensities, respectively, which were calculated by using Photoshop CS6 and ImageJ based on counting the numbers of DAB staining pixels and callose staining pixels. At least 6 typical photographs were selected from 10 randomly selected seedlings in each treatment. Three replicates were performed for each treatment.
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9

Pulmonary Vascular Remodeling Evaluation

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Pulmonary artery tissues of rats were immediately collected after sacrifice and fixed with 10% paraformaldehyde for at least two days at room temperature, and then decalcified in 0.5 M EDTA (pH = 8.0) and embedded in paraffin. Sections were cut into 3-μm thick, mounted on glass slides, stained with an hematoxylin and eosin (H&E) staining kit (G1120, Solarbio, China) and visualized using a 100 × inverted microscope (Ts2r-FL, Nikon, Japan). To quantify the wall thickness (WT%) and the vessel area percentage (WA%) to evaluate the pulmonary vascular remodeling and the external and internal area: WT% = (external diameter – internal diameter)/external diameter × 100%. WA% = (external area – internal area)/external area × 100%.
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10

Tumor-Induced Angiogenesis Assay

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The BC cell culture medium was replaced by serum-free DMEM and cells were cultured for 48 h. Next, the cells were collected, centrifuged, and filtered to obtain tumor-conditioned medium. The 96-well plates were coated with 50 µL ice-cold Matrigel (Solarbio) and incubated for 30 minutes at 37°C. Then, 1 × 104 human umbilical vein endothelial cells (HUVECs) were seeded onto the gel with 200 µL tumor-conditioned medium. After incubation at 37°C for 6 hours, the tube length of HUVECs was evaluated using a 100× inverted microscope (Ts2r-FL; Nikon).
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