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33 protocols using ez read 2000

1

Cytotoxicity Evaluation of Compounds on Prostate Cancer Cells

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The non-cytotoxic concentration of the samples on DU-145 cells was determined by sulforhodamine B (SRB) assay, as previously described [50 (link)]. Human prostate cancer cells (1 × 105 cells/mL) were cultured in 96-well plates for 24 h at 37 °C and 5% CO2. The cells were tested with the samples in the range of 0.0001–10 mg/mL for another 24 h. After incubation, the adherent cells were fixed in situ by 50% trichloroacetic acid and dyed with 0.04% SRB solution, which was prepared in 1% acetic acid. The bound dye was solubilized, and the absorbance was measured at 515 nm using the microplate reader (EZ Read 2000, Biochrom, Holliston, MA, USA). The percentages of cell viability were calculated by Equation (4), where AbsControl is the absorbance of cells cultured with the medium without supplementation, AbsBlank is the absorbance of cells treated with the solvent, and AbsSample is the absorbance of cells treated with the sample: Cell viability %=AbsSample AbsBlankAbsControl AbsBlank ×100
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2

ABTS Radical Scavenging Assay Protocol

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The ABTS assay was evaluated according to the previous method with some modifications [50 (link)]. The assay was based on ABTS radical scavenging ability in comparison to that of Trolox and L-ascorbic acid in the range of 0.01–10 mg/mL. The ABTS stock solutions were prepared by placing 7 mM of ABTS radical solution in distilled water reacted with 2.45 mM of potassium persulfate solution, and they were stored at room temperature in the dark for 12–16 h. Then, the ABTS working solution was diluted to obtain an absorbance of 0.7–0.9 at 734 nm with distilled water using the microplate reader (EZ Read 2000, Biochrom, Holliston, MA, USA). The sample (25 µL) was reacted with 200 µL of ABTS solution for 10 min. The percentages of the ABTS radical scavenging activity were calculated by Equation (2), where AbsControl is the absorbance of the ABTS solution, and AbsSample is the absorbance of the ABTS radicals that reacted with the sample: ABTS radical scavenging activity %=AbsControl AbsSampleAbsControl×100. 
The concentration providing 50% scavenging activity (MC50) (mg/mL) was obtained from the linear relationship between the different concentrations of the samples and the percentages of the ABTS radical scavenging activity.
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3

Kombucha Tea Cytotoxicity Evaluation

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The cytotoxicities of kombucha tea were tested using MTT assay. NIH/3T3 cells were used as normal cell control. Human colorectal carcinoma (Caco-2) and NIH/3T3 cells were cultured in Dulbecco’s modified Eagle medium (DMEM; Gibco, Grand Island, NY, USA) that had been supplemented with 10% (v/v) heat-inactivated fetal bovine serum (HyCloneTM, Pittsburgh, PA, USA), 100 Units/mL penicillin and 100 μg/mL streptomycin (CAISSON, Smithfield, UT, USA). After incubation at 37 °C in a 5% CO2 incubator (SHEL LAB, USA), the cells were washed twice with phosphate buffer saline (PBS, pH 7.4) and trypsinized with 0.05% (v/v) trypsin-EDTA solution (CAISSON, USA). The Caco-2 and NIH/3T3 cells were plated in 96-well plates and incubated at 37 °C in a 5% CO2 incubator for 24 h. After incubation, each concentration of kombucha tea was then added. The plates were incubated at 37 °C in a 5% CO2 incubator for 48 h. The MTT solution (Bio Basic Inc., Amherst, NY, USA) was then added and the solution was incubated for 4 h. Finally, blue formazan crystals were dissolved with dimethyl sulfoxide and the absorbance was measured at 540 and 630 nm by micro plate reader (EZ Read 2000, Biochrom, Cambridge, UK). The percentage of cell viability was calculated by comparing the relevant values to the cell control [19 (link)].
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4

Proliferative Ability of Stem Cells

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The proliferative ability of the BMSCs and DPSCs was evaluated by MTT assays. Briefly, the cells were seeded in 24-well plates with a density of 1 × 104 cells per well and allowed to adhere for 24 h. After incubation for 1, 2, 3, 4, 5, 6, 7, and 8 days, 50 μl of a MTT solution consisting of 0.5 mg/ml MTT (3-(4,5-dimenthylthiazol-2-yl)-2,5-diphenyltetrasoliumbromide) (Roche Applied Science, Mannheim, Germany) was added to each well. The cells were incubated for a further 4 h at 37 °C to prompt the conversion of the MTT salt to water-insoluble formazan by the viable cells. The precipitated insoluble formazan was dissolved by 500 μl DMSO. The light absorbance of the formazan concentration was then measured at a wavelength of 570 nm using a microplate reader (EZ read 2000, Biochrom Ltd, Cambridge, UK) and a reference filter with a wavelength of 690 nm.
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5

CCL18 Induced U-87 MG Proliferation

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U-87 MG cells were seeded in a 96-well plate at a density of 20,000 cells/cm2 in a complete medium. After 24 h of incubation, the medium was drawn off and the cells were washed with warm PBS. Then, full medium with either 10 ng/mL, 20 ng/mL or 50 ng/mL of CCL18 (SigmaAldrich, Poznań, Poland) was added to the wells. For each given concentration of CCL18 under study, 8 replicates were performed. The control for each concentration was a sample (8 replicates) with an appropriate amount of PBS added so that the final concentrations of the medium components in the compared samples were equivalent to each other. Cells were incubated in the provided medium for 48 h. Then 20 µL of 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium (MTT) (5 µg/µL, SigmaAldrich, Poznań, Poland) was added to each well and incubated for 2 h in an incubator. In the next step, the culture medium was gently and thoroughly removed and 150 μL of dimethyl sulfoxide (DMSO) (SigmaAldrich, Poznań, Poland) was added to each well and incubated in the dark for 10 min. The absorbance of each well was measured using a microplate reader (EZ Read 2000, Biochrom, Poland) at 590 nm.
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6

DPPH Radical Scavenging Assay of Plant Extracts

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Antioxidant activity of Al and Gg extracts was determined based on DPPH scavenging ability [65 (link)]. Seventy-five microliters of the extracts at various concentrations (0.015–1 mg/mL) were mixed with 150 μL of 0.2 mM DPPH, incubated for 30 min, and the absorbance at 515 nm was monitored using a microplate reader (Biochrom EZ Read 2000, UK). Ethanol was used as the blank solution and L-ascorbic acid was the positive control. The scavenging activity of DPPH radicals was calculated and expressed as a percentage of the blank. The IC50 value represents the concentration of extract capable of reducing DPPH by 50%, calculated using a linear regression graph.
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7

Cytotoxicity Assay of Antitumor Compounds

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Cytotoxicity was tested by the SRB assay kit. Human melanoma A2058 cells were transferred to 96-well plates at a concentration of 1 × 104 cells per well and treated with lepadin A (1), doxorubicin (2) and cisplatin (2) from 2 nM to 100 µM starting from DMSO stock solutions of each compound at concentration of 5 mg/mL. After 24 h, cells were fixed and stained according to manufacturer’s instructions. The optical density was determined at 565 nm and cytotoxicity was calculated as reported by [16 (link)]. Spectrophotometric measurements were performed using EZ Read 2000 microplate readers (Biochrom, Cambridge, United Kingdom).
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8

Cell Viability and Proliferation Assays

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After the end of the treatment, cell viability was measured by EZ4U MTT assay (Biomedica, Vienna, Austria) according to the manufacturer’s instructions. Briefly, 24 h after treatments, cells were incubated with 20 µL of the colorless dye. The dye is oxidized in the living cells to yellow water-soluble product, which is then measured on plate reader (EZ Read 2000, Biochrom, Cambridge, UK) at 450 nm, with 620 nm as a reference wavelength.
Cell proliferation was measured by BrdU assay (Roche, Basel, Switzerland), according to the manufacturer’s instructions. Briefly, 22 h after treatments, cells were incubated with 10 µL of labeling solution for 2 h. Next, cells were fixed and stained with anti-BrdU-POD solution. Color development was stopped with stop solution, and the color development was measured on a plate reader (EZ Read 2000) at 450 nm.
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9

Quantification of Total Phenolic Compounds

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The total phenolic compound was determined according to Rungruang.[11 ] A volume sample of 20 μL (1 mg/mL) solution containing TCRB extract was prepared and added 100 μL of 10% Folin–Ciocalteu solution. Subsequently, 80 μL Na2CO3 7.5% (w/v) was reacted with sample, and the mixture was maintained for 60 min. The absorbance was detected at 760 nm (Biochrom EZ Read 2000, Cambridge, UK).
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10

Plasma Membrane Damage Assay for Protein Toxins

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To determine the plasma membrane damage of the cells as a result of protein toxin treatment, 1 × 104 cells of Hs68 and MCF-7 cell lines were seeded into each well of a 96-well plate and cultured for 48 h. Cells were incubated with toxins (BinBC and LHRH-BinBC) at 1, 2, 4, 8, and 16 μM for 48 h. After toxin incubation, lactate dehydrogenase (LDH, Tokyo, Japan) leakage was determined using LDH-Cytotoxicity Assay Kit II (Abcam, ab65393, Cambridge, MA, USA) as described in the manufacturer’s protocol. The absorbance was measured at 450 nm with the reference wavelength at 650 nm using a microplate reader (Biochrom EZ Read 2000, Cambridge, UK), and the experiments were done in triplicates. LDH efflux (%) was determined by comparing the absorbance values of reaction mixtures from treated cells to those of untreated cells (low control) and cells treated with lysis solution (high control).
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