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25 protocols using orion 4 star

1

Comprehensive Manure Characterization Protocol

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Manure samples were stored below −20°C and analyzed for pH, electrical conductivity (EC), biological oxygen demand (BOD), chemical oxygen demand (COD), suspended solids (SS), total nitrogen (T-N), total phosphorus (T-P), ammonium nitrogen (NH4-N), total organic carbon (TOC), and total carbon (TC). Biological oxygen demand, COD, SS, T-N, and T-P were analyzed using the standard American Public Health Association (APHA) method [14 ]. The pH was determined using a digital pH meter (Orion 4 Star, Thermo Scientific, Waltham, MA, USA), and EC was determined using a conductivity meter equipped with a real-time data logger (YK 2005CD, Lutron Electronic Enterprise Co., Taipei, Taiwan). The T-N content in manure was measured using the Kjeldahl method [15 (link)]. NH4-N was determined according to the method of Chaney and Marbach [16 (link)]. The TC and TOC were analyzed using a total organic carbon analyzer (TOC-L, Shimadzu Corporation, Kyoto, Japan).
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2

Curing and Storage Effects on Pit and Fissure Sealant

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Bar-shaped molds were prepared with dimensions of 25 mm × 2 mm × 2 mm. The experimental materials were filled into the molds and covered with a polyester film. To remove the excess material, pressure was applied to the specimen with a slide glass. The experimental materials were then cured by overlapping the irradiation regions (20 s each) from both sides after mixing each concentration of pit and fissure sealant and ZnO NPs as described in Section 2.1. The cured specimens were removed from the mold and stored in distilled water (DW) at 0.14 cm3/1 mL for 1, 2, 4, 7, 14, 21, 30, 60, and 90 days. The DW was replaced at each time point, and the pH of the storage solution was measured after removing the specimens from DW at each time point. The pH measurements were obtained using a digital pH meter calibrated to pH 4.01, 7.0, and 10.01 (Orion 4 Star, Thermo Fisher Scientific, Waltham, MA, USA). The measurements were repeated thrice.
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3

Carbonate Chemistry and Benthic Cover Assessments

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Percentage cover of the substratum and associated carbonate chemistry were assessed in June 2017 using nine 50 m transects (three in the reference area and a further six following gradients in pCO2), with four photoquadrats (50 × 50 cm) and a seawater sample (100 ml) taken every 5 m along the transects (transect locations shown on Supplementary Fig. 5). Seawater sample temperature, salinity and pHNBS were immediately recorded (Orion 4-Star, Thermo Scientific, USA) onboard RV Tsukuba II (University of Tsukuba research vessel). Photoquadrats were analysed using ImageJ68 by overlaying 64 points on a grid, and recording the presence of turf algae, other macroalgae, or coral. The relationship between the percentage cover and measured pH was assessed using a negative binomial generalised linear model (Family: Binomial, Link: Logit) with the ‘predict.glm’ function in R69 .
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4

Calcium Ion Release Analysis of Dental Materials

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The light-curable materials were cured on placed in the standardized mold (Ø = 15 mm and h = 1 mm). Cured specimens were placed on the bottom of a cylindrical container filled with 2.19 mL of deionized water and stored at 37 °C. After 1, 3, 7, 14, and 21 days, the storage water was removed and replaced as part of the test. The calcium ion release pattern was measured from media extracted from the dental material with inductively coupled plasma-atomic emission spectrometry (ICP–AES) (Optima 4300 DV, Perkin-Elmer, Waltham, MA, USA). Additionally, the, pH of the extraction media was detected with a digital pH meter (Orion 4 Star, Thermo Fisher Scientific). For accurate measurement, the blank control was detected first (7.6±0.1) and after performing calibration according to the manufacturer’s protocol. In each sample, three measurements (n = 3) were performed to confirm reproducibility. The average value (n = 3) ± SD was recorded.
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5

In Vitro Rumen Fermentation Protocol

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In vitro fermentation of the samples was conducted in an automated ANKOM gas production system (ANKOM RF; Ankom Technology Corp., New York, NY, USA). Briefly, buffered solution [4 ] was prepared and placed in a water-bath at 39 °C under continuous flushing with CO2. Then, five jar bottles (250 mL) were filled with 78 mL of buffer solution along with 0.5 g of randomly assigned feedstuff (two of each feedstuff and one controls) per run. Four milliliters of inoculum were transferred to each fermentation bottle that, in turn, were immediately attached to the Ankom system. Blanks contained only the medium, inoculum and sheep feed. Bottles were incubated at 39 °C for 72 h. The pH of the contents of these bottles was recorded (pH meter, Thermo Scientific Orion 4-Star) at time 0 and at the end of the experimental period, that is, 72 h. The pH of the medium and CO2 saturation at time 0 was controlled by a color change for the resazurin indicator from purple to pink/colorless. Pressure readings inside the bottles were recorded remotely every 10 min, through a wireless data logger system and the Ankom software (Gas Pressure Monitor, Ankom Technology Corp., Macedon, NY, USA) via a computer.
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6

Seawater Chemistry Monitoring in Aquaria

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Seawater parameters were measured daily in each tank. Temperature, salinity, and dissolved oxygen concentrations were recorded using a YSI multiparameter probe (Professional Plus). Seawater pHNBS was measured using a pH meter (Thermo Scientific Orion 4 star). For total alkalinity (AT) assays, seawater samples were collected daily in air-tight 20 mL vials without air space to prevent gas exchange with the atmosphere, stabilized by mercuric chloride poisoning59 . Samples for alkalinity assays were collected while other seawater chemistry parameters were measured. Alkalinity samples were kept in the dark and analyzed within three months of collection. Seawater alkalinity was determined with an automatic titrator (Metrohm 848 Titrino Plus) and Dickson seawater (Batch 144) according to Dickson et al.59 . Other carbonate system parameters were calculated from temperature, salinity, AT, and pHNBS using the CO2SYS program (http://cdiac.ornl.gov/ftp/co2sys/) with dissociation constants (K1 and K2) according to Mehrback et al.60 (link) refit by Dickson and Millero61 (link), and KHSO4 dissociation constant after Dickson62 (link).
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7

Laboratory-scale Animal Carcass Burial System

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A lab-scale system was designed based on animal carcass mass burial procedures developed by the Korean Ministry for Food, Agriculture, Forestry and Fisheries. The lab-scale system, (1/7 normal size), was 0.54 m (l) x 1.4 m (w) x 0.85 m (h), approximately 0.67 m3 in volume, and is described in detail by Yang et al. (2012) . Three lab-scale systems, each of which can accommodate an approximately 115 kg single pig carcass, were placed in a room at 35 °C. The leachate samples were collected using a peristaltic pump from each of three containers once each week for the first month and then at 6 and 14 weeks. Serial collected sample sets from the triplicate system during decomposition were used for molecular analysis. The pH was measured immediately after collection using a bench-top pH meter (Orion 4 STAR, Thermo Scientific Inc., Beverly, USA), and then the leachate samples were stored at −80 °C.
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8

pH Measurement with Orion 4 Star

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We measured pH with a pH meter (Orion 4 Star, ThermoScientific; Massachusetts, USA) equipped with a glass electrode.
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9

Yogurt Acidity Determination by HPLC

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The pH of the yogurt was measured using a pH meter (Orion 4 Star; Thermo Scientific, Beverly, MA, USA). The total acidity of the yogurt was determined as the amount of standardized 0.1 N NaOH required for neutralization using 1% phenolphthalein as an indicator. It was expressed as lactic acid (%) content [14 (link)]. The lactic acid content of the yogurt was analyzed by modifying the method described by Hwang et al. [15 (link)]. The yogurt was diluted to an appropriate concentration, filtered through a 0.45 μm membrane filter, and analyzed by HPLC (YL9120 system, Younglin, Anyang, Republic of Korea). The column used was a YMC-Triart C18 column (4.6 × 250 mm ID, YMC Co., Ltd., Kyoto, Japan). The absorbance was detected at 215 nm using a UV detector. The mobile phase was a 20 mM potassium phosphate-buffered solution (pH 2.8). The flow rate was 0.6 mL/min and the injection volume was 20 μL. Lactic acid was used as a standard.
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10

Acid Neutralization Capacity of Specimens

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Acid neutralization capacity was analyzed by studying the dynamic pH change of Lactic acid. The size of the specimen used to observe the pH neutralization was 2 × 2 × 25 mm. Lactic acid (Sigma-Aldrich, Steinheim, Germany) was diluted in distilled water to a pH of 4.0 and three specimens were immersed into the buffered Lactic acid solution (2.14 mL). The volume ratio of the specimen and the solution was matched at 0.14:1 as per the previous study [72 (link)]. Changes were detected in real time using a digital pH meter (Orion 4 Star, Thermo Fisher Scientific Inc., Singapore). pH data was collected per min up to 400 min.
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