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28 protocols using unity inova 500 mhz

1

Spectroscopy and Chromatography Methods

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General.
1H and 13C NMR spectra were run on a Bruker Avance 300 MHz or a Varian Unity Inova 500 MHz NMR spectrometer. Mass spectra (MS) were run on a PerkinElmer Sciex API 150 EX mass spectrometer. High resolution mass spectra (HRMS) were run on a Waters Synapt G2 Q-TOF mass spectrometer in high-resolution mode. Column chromatography was carried out using a Teledyne Isco Combiflash Rf system with RediSep Rf silica cartridges. Preparative thin layer chromatography was carried out using Analtech TLC Uniplates (silica gel, 1000 mm, 20 cm × 20 cm). High pressure liquid chromatography was performed using a system consisting of a Waters 1525 pump unit, driven by Empower software, and a Waters 2487 detector. Microwave chemistry was carried out using a CEM Discover SP microwave with 10 mL irradiation tubes.
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2

Spectroscopic Analysis of Organic Compounds

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Optical rotations were determined by using a P-2000 polarimeter (JASCO). Infrared (IR) spectra were recorded on a Mattson Genesis II spectrometer (Thermo). High-resolution electrospray ionization mass spectrometry (HRESIMS) data were obtained on an LCQ mass spectrometer (Thermo). Highresolution electrospray ionization mass spectrometry (HRESIMS) data were measured on a Shimadzu IT-TOF HR mass spectrometer. Nuclear magnetic resonance (NMR) spectra were recorded on Varian Unity Inova 500 MHz, or Varian VNMRS 600 MHz spectrometers. For column chromatography (CC), and silica gel 60 (70–230 and 230–400 mesh, Merck) were used. Precoated silica gel plates (Merck 60 F-254) were used for thin layer chromatography (TLC). High-performance liquid chromatography (HPLC) separations were performed on a Shimadzu LC-8A pump with a UV SPD-20A detector equipped with a 250 × 20 mm i.d. preparative Cosmosil 5C18 AR-II column (Nacalai Tesque).
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3

Proton NMR Characterization of Polymer Conversions

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Proton NMR was used to calculate all monomer conversions from vial
polymerizations. NMR spectra were obtained using a Varian Unity Inova
500 MHz spectrometer at room temperature with CDCl3 as
the deuterated solvent. All spectra were recorded using 64 scans with
a relaxation delay time of 1 s. All chemical shifts were referenced
to chloroform.
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4

Spectroscopic Characterization of Biomolecules

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UV/vis: Hitachi U3000 spectrophotometer,
λmax [nm] (relative ε), in H2O.
CD: Jasco J715 spectropolarimeter, λmax and λmin [nm] (Θ), in H2O. 1H nuclear
magnetic resonance (NMR): Bruker UltraShield 600 MHz or Varian Unity
Inova 500 MHz spectrometers, δ[ppm] with δ(HDO) = 4.79
ppm, in D2O. Electrospray ionization mass spectrometry
(ESI-MS): Finnigan MAT 95S, m/z (rel.
intensity), positive-ion mode, 1.4 kV spray voltage; signals with
>5% rel. intensity are listed.
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5

NMR Characterization of Biomolecular Samples

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NMR samples were prepared at a concentration of about 1.5 mM, in 0.6 ml (H2O/D2O 9:1 v/v) buffer solution having 10 mM KH2PO4/K2HPO4, 70 mM KCl and 0.2 mM EDTA (pH 7.0). All the samples were heated for 5–10 min at 90°C and slowly cooled (10–12 h) to room temperature. The solutions were equilibrated for several days at 4°C. The annealing process was assumed to be complete when 1H-NMR spectra were superimposable on changing time. NMR spectra were recorded with Varian Unity INOVA 500 MHz spectrometer. 1D proton spectra of the sample in H2O were recorded using pulsed-field gradient DPFGSE for H2O suppression. 1H-chemical shifts were referenced relative to external sodium 2,2-dimethyl-2-silapentane-5-sulfonate (DSS). Pulsed-field gradient DPFGSE sequence was used for NOESY (180 ms and 80 ms mixing times) and TOCSY (120 ms mixing time) experiments in H2O. All experiments were recorded using STATES-TPPI procedure for quadrature detection. In all 2D experiments, the time domain data consisted of 2048 complex points in t2 and 400–512 fids in t1 dimension. A relaxation delay of 1.2 s was used for all experiments.
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6

NMR Characterization of Organic Compounds

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All NMR experiments
were performed
at 25 °C on a Varian Unity Plus 300 spectrometer or Varian Unity-Inova
500 MHz spectrometer equipped with a 5 mm triple-resonance 1H(13C/15N), z-axis pulsed-field
gradient probe head. For characterization purposes, samples consisted
of a ∼5 mM solution of each compound in chloroform-d (99.8% D, Cambridge Isotopes), dimethyl sulfoxide-d6 (99.9% D, Cambridge Isotopes), benzene-d6 (99.5%
D, Cambridge Isotopes) or acetone-d6 (99.9%
D, Cambridge Isotopes), and the spectra were referenced to residual
solvent peaks at 7.27, 2.50, 7.16, and 2.05 ppm, respectively. 1H-1D spectra were acquired at a resolution of 16k complex
points in the time domain with 32 accumulations each (sw = 6000 Hz,
d1 = 3 s).
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7

Synthesis and Characterization of Pyrogallol[4]arene Compounds

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Reagents, solvents, guest molecules, and synthetic precursors were purchased from commercial suppliers at ACS Reagent Grade or equivalent purity and used without further purification. Pyrogallol, butrylaldehyde, anthracene, fluoranthene, pyrene, and fluorene were obtained from Acros Organics. Hydrochloric acid, ethanol, and methanol were obtained from Fisher Scientific. Undecanal and 1,5-diaminonaphthalene were obtained from TCI. Carbazole and coumarin were obtained from Sigma-Aldrich. 1-Adamantanecarboxylic acid and [2.2]paracyclophane were obtained from Alfa Aesar and Combi-blocks respectively. Deuterated solvents for NMR spectroscopy were purchased from Cambridge Isotopes. CDCl3 was filtered through basic alumina prior to use. Pyrogallol[4]arenes 1a and 1b were synthesized using published procedures.26 ,32
1H and 13C solution NMR spectra were acquired using a Bruker Avance IIIHD 600 MHz, a Varian Unity INOVA 500 MHz, or a Varian Mercury 400 MHz spectrometer. Residual solvent peaks were used as internal standards: CHCl3 (δH = 7.26 ppm; δC = 77.16 ppm), benzene (δH = 7.16 ppm; δC = 128.06 ppm). NMR measurements performed in CCl4 used a coaxial NMR tube insert and C6D6 for an external solvent lock and chemical shift referencing.
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8

Spectroscopic and Chromatographic Analysis

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Optical rotations were measured on a Rudolph Research Autopol III automatic polarimeter. ECD measurements were performed using a JASCO J-715 spectropolarimeter. 1D and 2D NMR data were recorded on Varian Unity Inova 500 MHz FT-NMR instruments, and the data were processed using MestReNova 10.0 software (Mestrelab Research SL, Santiago de Compostela, Spain). Mass spectrometry experiments were performed on an Agilent 6538 HRESI QTOF MS system coupled to an Agilent 1290 HPLC system. HP-20ss (Sorbent Technologies, Norcross, GA, USA) and Sephadex LH-20 (GE Healthcare Bio-Science AB, Uppsala, Sweden) were used for open-column chromatography. Thin-layer chromatographic (TLC) analyses were conducted using Kieselgel 60 F254 plates (silica gel, 0.25 mm layer thickness, Merck, Germany) with visualization under UV light (254 and 365 nm). HPLC separations were performed on a Shimadzu system using a SCL-10A VP pump and system controller with a Phenomenex Gemini 5 μm C18 column (110 Å, 250 × 21.2 mm, 10 mL/min) for preparative HPLC, and on a Waters system using a Waters 1525 binary pump and Waters 2998 photodiode array detector with a Phenomenex Gemini 5 μm C18 column (110 Å, 250 × 10.0 mm, 4 mL/min) for semi-preparative HPLC. All solvents were of ACS grade or better.
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9

NMR Characterization of Cyclodextrin Complexes

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Samples of equivalent concentrations (9 mM) of BCL, SBE-β-CyD, HP-β-CD, and the corresponding inclusion complexes were prepared in a D2O/CD3OD (8:2, v/v) solution and transferred to 5-mm NMR tubes for spectrum acquisition. All spectra were recorded at 300 K with a Varian Unity Inova 500 MHz (11.75 T) instrument. The deuterated methanol (3.30 ppm) was used as an internal reference, to avoid the addition of external references that could interact with the CyDs.
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10

NMR Spectroscopy of Micro RNA Samples

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1H-NMR spectra were acquired at 5, 25, 37 and 49 °C either on a Varian Unity Inova 700 MHz spectrometer equipped with an HCN triple resonance cryoprobe or on a Varian Unity INOVA 500 MHz spectrometer equipped with a broadband inverse probe with z-field gradient and processed using the Varian VNMR and iNMR (http://www.inmr.net) software packages. All micro RNA samples were prepared at ~0.3 mM concentration by dissolving 75 nmol of each miRNA in 250 µL of 10 mM PBS buffer at pH 6.8. The spectra were acquired as 16,384 data points with a recycle delay of 1.0 s; data sets were zero-filled to 32,768 points prior to Fourier transformation and apodized with a shifted sine bell squared window function. Water suppression was achieved by including a double pulsed-field gradient spin-echo (DPFGSE) module45 (link),46 (link) in the pulse sequence prior to acquisition.
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