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Pbr322 dna

Manufactured by New England Biolabs
Sourced in United States

PBR322 DNA is a plasmid vector commonly used in molecular biology research. It serves as a standard reference DNA for various applications, including cloning, sequencing, and genetic engineering experiments.

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2 protocols using pbr322 dna

1

Purification and Reconstitution of E. coli Topo IV

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The ParC and ParE subunits of E. coli Topo IV were expressed and purified, and the active enzyme was reconstituted as previously described [15 (link), 29 (link)]. The plasmid pBR322 DNA and kinetoplast DNA were purchased from New England Biolabs (Ipswich, MA, U.S.A.) and TopoGEN (Port Orange, FL, U.S.A.), respectively.
The 8-methyl-quinazoline-2,4-dione (UIJR1-048) and the 8-methoxy-quinazoline-2,4-dione (UING5-207) were synthesized as previously described [30 , 31 (link)]. Ciprofloxacin (CFX) and moxifloxacin were purchased from MP Biomedical Inc. (Irvine, CA, U.S.A.) and ChemPacific (Baltimore, MD, U.S.A.), respectively. Norfloxacin was purchased from Sigma-Aldrich (St. Louis, MO, U.S.A.). Other chemicals and reagents were purchased from Sigma-Aldrich, Thermo Fisher Scientific (Waltham, MA, U.S.A.), or Roche Applied Science (Indianapolis, IN, U.S.A.).
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2

Photochemical Cleavage of Supercoiled DNA

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The supercoiled pBR322 DNA (New
England Biolabs) was used as a substrate. A mixture of pBR322 DNA
(12.5 μg·mL–1) and Gd-1 (0.1
mM) in 10 mM Tris-HCl (pH 8.0) was placed in the 96-well micro plate
and irradiated with a green LED light (dominate wavelength: 527 nm,
25 mW per well) using a Lumidox Gen II Apparatus (Analytical Sales
& Services, Inc., Franders, NJ, USA). Each sample was mixed with
Gel Loading Dye Purple (New England Biolabs, Inc.) and subjected to
the agarose gel electrophoresis. Subsequently, the gel was stained
with GelRed Nucleic Acid Gel Stain (Biotium, Inc., Fremont, California,
USA) and visualized and photographed using a ChemiDoc MP transilluminator
(Bio-Rad Laboratories, Inc., Hercules, California, USA). The photographed
images were analyzed using ImageJ33 (link) to
quantify the relative amount of intact DNA (Form I) and nicked circular DNA (Form II).
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