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D trehalose

Manufactured by Merck Group
Sourced in United States, Germany

D-trehalose is a disaccharide molecule composed of two glucose units. It is a naturally occurring carbohydrate that serves as a stabilizing agent for various biomolecules and cellular structures. The core function of D-trehalose is to provide protection and maintain the structural integrity of proteins, enzymes, and other sensitive compounds during storage or exposure to stress conditions.

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33 protocols using d trehalose

1

Transcriptional Profiling of Neuromodulatory Cell Types

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Mice were anaesthetized with isoflurane, decapitated, and the auditory cortex was isolated immediately. We then used a trehalose-supplemented protocol64 (link) to isolate EGFP-labeled 5-HT3AR-, PV-, or SOM-expressing cells using the corresponding Cre lines. Digestion and dissociation were performed using the Papain Dissociation System (Worthington Biochemical Corporation) in the presence of 10% (vol/vol) D-trehalose (Sigma-Aldrich). Digested tissue was dissociated with measured trituration to obtain a single cell suspension of mostly viable cells. GFP-positive cells were collected using MoFlo (Beckman Coulter) in the Bauer Core Facility at Harvard University and total RNA was extracted using TRIzol Reagent (Invitrogen) and RNeasy Micro Kit (Qiagen). cDNA was synthesized from total RNA using the High Capacity RNA-to-cDNA Kit (Invitrogen) according to the manufacturer’s instructions. Real-time quantitative PCR was performed using the TaqMan Gene Expression Assay (Applied Biosystems) on a StepOnePlus Real-Time PCR System (Applied Biosystems). TaqMan probes used were for Lynx1 (Mm01204957_g1), Chrna4 (Mm00516561_m1), Chrna7 (Mm01312230_m1), Chrnb2 (Mm00515323_m1), HTR3A (Mm00442874_m1) and Gapdh (4352932E). Relative expression of target genes was quantified using the 2−ΔΔCt method65 (link).
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2

CAGE Library Preparation for Illumina Sequencing

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Five µg RNA samples were subjected to library preparation of Cap Analysis Gene Expression CAGE using CAGE protocol adapted for Illumina sequencing (Takahashi et al., 2012 (link)). Specifically, to promote complementary DNA (cDNA) synthesis through GC-rich sequences in the 5′ untranslated regions (5′ UTR), the reaction was carried with the presence of D-trehalose (Sigma-Aldrich cat. T0167) and D-sorbitol (Wako, cat. 19803755) at high temperature. Capped RNAs of RNA–DNA hybrids were Biotinylated (Vector lab, cat. SP1100) and purified by MPG streptavidin beads (Takara, cat. 6124A) followed by RNAse (Promega, cat. M4261) digestion to release cDNAs corresponding to the 5′ ends of the original mRNA. 5′ linkers harboring barcodes sequences and EcoP15I (NEB, cat. R0646S) recognition site were ligated, and second-strand synthesis was performed. Then, fragments of the first 27 bp of the 5′ UTR were produced by EcoP15l digestion and ligated to 3′ linkers containing the Illumina primer sequence. The resultant CAGE tags were amplified by polymerase chain reaction (PCR), purified and sequenced by Hiseq 2500 (Illumina) with the addition of 30% PhiX spike-in to balance the low complexity of the 5′ ends of the CAGE libraries.
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3

Lyophilized RT-LAMP and CRISPR-Cas12a Assay

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To the RT-LAMP reaction mix excluding isothermal amplification buffer, 38.8%w/v D-trehalose (Sigma-Aldrich) was added to afford a final concentration of 10%w/v. This master mix was aliquoted (11.6 μL) into DNase/RNase-free tubes or chamber 7 of the IFAST-LAMP-CRISPR device, and stored at -80°C for 1 h prior to freeze-drying at -45°C, 11.6 psi for 24 h. The lyophilized reagent was kept at -20°C. For RT-LAMP, the lyophilized reagent was re-constituted in 12.5%w/v isothermal amplification buffer (20 μL, New England Biolabs) and the reaction was conducted as previously described.
For lyophilized CRISPR-Cas12a reagents, nuclease-free water was replaced with 12.7%w/v D-trehalose (final concentration = 10%) in the master mix, which was subsequently aliquoted into DNase/RNase-free tubes (20 μL) and kept at -80°C for 1 h prior to freeze-drying at -45°C, 11.6 psi for 24 h. The lyophilized reagents were kept at -20°C and re-constituted in nuclease-free water (20 μL) before use.
On-chip integrated steps were next conducted in a single assay device containing lyophilized RT-LAMP reagents within chamber 7 in a similar manner as in the assay with freshly prepared reagents. After amplification, the magnetic beads were pulled into chamber 9 prefilled with CRISPR-Cas12 assay mix prepared from lyophilized reagents and the detection process continued as previously explained.
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4

Production of Isotope-Labeled Bacterial Needles

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For this purpose, needles were obtained in batches from about 20 L total of bacteria growing in M9-type minimal media (Studier, 2005 (link)) supplemented with 2 g ml−115N labelled ammonium chloride and U–13C6 labelled d-glucose (Cambridge Isotope Laboratories/CK Gas). Overnight cultures of 5 ml M9 minimal Media with labelled glucose and NH4Cl, were inoculated with ΔmxiH (pACT3mxiH; (Shen et al., 2010 (link))), with kanamycin and chloramphenicol. The cultures were incubated at 37 °C with shaking at 180 rpm. After 16 hrs, the optical density at 600 nm (OD600) was measured. If the OD600 was >1.00, all of the 5 ml culture was used to inoculate 1 L of M9 minimal media, labelled as above, in a 5 L sterile conical flask, with 200 μM IPTG and incubated at 37 °C with shaking at 180 rpm. After 16 hrs, the OD600 was measured again, if OD600 was >1.10, growth was halted and needles purified as previously described (Cordes et al., 2005 (link), Fujii et al., 2012 (link)). The final pellet was resuspended in 0.01% of the initial culture volume in sterile 20 mM Tris–HCl pH 7.4, 100 mM NaCl, 10% w/v d-(+)-Trehalose (Sigma) and 0.02% w/v sodium azide, generally attaining 3–7 mg ml−1 in protein concentration, and then flash frozen in liquid nitrogen and stored at −80 °C until use. From 20 L of bacterial culture about 7 mg of labelled needles were obtained.
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5

Fluorescent Labeling of Larval Tissues

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All incubations were carried out in a PBS solution supplemented with: 50 mM d-Trehalose (Sigma T9531), 0.4 mM d-Glucose (Sigma G8270), 5 mM CaCl2, 15 mM MgSO4, 12.3 mM Glutamine. Late third instar larvae were dissected and incubated for 15 min with 5 μM ThiolTracker Violet (Molecular Probes T10095) at room temperature. Dissected larvae were then washed three times for 1 min before being mounted in the same solution on a glass slide. Slides were imaged immediately on a confocal microscope.
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6

Synthesis and Characterization of Azaadamantyl Spin Label

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The synthesis of azaadamantyl spin label 3 will be reported separately. Solutions of 3 in water were in 1 mm ID pyrex capillaries and were air saturated. To permit rigorous degassing, a 0.2 mM solution of 3 in 9:1 toluene:CH2Cl2 was prepared. A sample in a 4 mm OD quartz EPR tube was degassed by multiple cycles of freeze-pump-thaw and flame sealed.
D(+)-trehalose (Sigma-Aldrich, St. Louis, MO) and β-cyclodextrin (Sigma-Aldrich) were used as received. The preparation of 9:1 trehalose:sucrose glasses was performed as reported previously [5 (link)] with a 2000:1 molar ratio of sugars to 3. The addition of sucrose to the trehalose enhances glass formation. The initial concentrations were 0.09 M trehalose, 0.01 M sucrose, and 0.05 mM 3. To form the β-cyclodextrin complex in the sugar glass solid was added to the initial solution to make a 3.2 mM β-cyclodextrin solution. The concentrations of all solutes increase as the water evaporates. After the glasses were formed by slow evaporation of the water, the glassy solids were scraped off the glass surface and transferred to 4 mm OD quartz EPR tubes. Samples were evacuated overnight on a high vacuum line to remove oxygen and residual water and then flame sealed. Handling of 3 and its samples was performed with minimum lighting to avoid photodegradation.
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7

Transcriptional Profiling of Neuromodulatory Cell Types

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Mice were anaesthetized with isoflurane, decapitated, and the auditory cortex was isolated immediately. We then used a trehalose-supplemented protocol64 (link) to isolate EGFP-labeled 5-HT3AR-, PV-, or SOM-expressing cells using the corresponding Cre lines. Digestion and dissociation were performed using the Papain Dissociation System (Worthington Biochemical Corporation) in the presence of 10% (vol/vol) D-trehalose (Sigma-Aldrich). Digested tissue was dissociated with measured trituration to obtain a single cell suspension of mostly viable cells. GFP-positive cells were collected using MoFlo (Beckman Coulter) in the Bauer Core Facility at Harvard University and total RNA was extracted using TRIzol Reagent (Invitrogen) and RNeasy Micro Kit (Qiagen). cDNA was synthesized from total RNA using the High Capacity RNA-to-cDNA Kit (Invitrogen) according to the manufacturer’s instructions. Real-time quantitative PCR was performed using the TaqMan Gene Expression Assay (Applied Biosystems) on a StepOnePlus Real-Time PCR System (Applied Biosystems). TaqMan probes used were for Lynx1 (Mm01204957_g1), Chrna4 (Mm00516561_m1), Chrna7 (Mm01312230_m1), Chrnb2 (Mm00515323_m1), HTR3A (Mm00442874_m1) and Gapdh (4352932E). Relative expression of target genes was quantified using the 2−ΔΔCt method65 (link).
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8

Freeze-Drying Bacterial Cells with Protectants

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Following cultivation, the cell suspension was centrifuged using a Heraeus™ Biofuge™ Stratos™ Centrifuge (Thermo Fisher Scientific, Waltham, USA; 15,000 rpm, 0.3 L/min, 30 min) to enable cell harvesting. Then, the cells were washed by adding peptone salt solution (1 g/L peptone from casein; 8.5 g/L NaCl; 0.3 g/L KH2PO4; 0.6 g/L Na2HPO4·2H2O) and centrifuged again under the same conditions for another 15 min. After homogenizing the cell pellet, the protectants maltodextrin (dextrose equivalent 4.0–7.0; Sigma-Aldrich, Steinheim, Germany), D(+) trehalose (Sigma-Aldrich, Steinheim, Germany), and glucitol (D(-) sorbitol, Merck KGaA, Darmstadt, Germany) were added in several concentrations (0, 10, 25, 50, 75, and 100%) related to the bacterial dry matter (BDM, w/w). Afterwards, 1-mL aliquots of the suspensions were pipetted into freeze-drying glass vials and frozen in a − 80 °C freezer BF-U538 (Buchner Labortechnik, Pfaffenhofen an der Ilm, Germany). The process scheme is illustrated in Fig. 1.

Process scheme applied in this study

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9

Stabilizing Monoclonal Antibody IgG1 Freeze-Dried

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Monoclonal antibody IgG1 type (adalimumab, ADA) was kindly provided by AbbVie (Cork, Ireland). The qualitative composition of ADA formulation includes mannitol, citric acid monohydrate, sodium citrate, disodium phosphate dihydrate, sodium dihydrogen phosphate dihydrate, sodium chloride, and Polysorbate 80. The samples were in their commercial liquid form (100 mg/mL) and preserved at 4 °C until use. The osmolarity of the original formulation was measured by a Cryoscopic Osmometer (OSMOMAT® 030, Gonotec®, Germany). This equipment measures the freezing point depression, thus determining the total osmolality of aqueous solutions. The osmolarity of commercial ADA was 0.274 ± 0.0175 Osm/L and possessed a pH of 5.3 ± 0.007. D-mannitol, D-trehalose, and polyethylene glycol 6000 and 8000 (PEG) were purchased from Sigma-Aldrich (Burlington, USA) and Dextran 40 kDa was obtained from Pharmacosmos (Holbæk, Denmark). These ingredients were explored as potential excipients to improve the stability of the freeze-dried, concentrated IgG1 samples.
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10

Analysis of Sugars and Organic Acids

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The chemical composition, encompassing free sugars and organic acids was evaluated following procedures previously described by Barros et al. [20 (link)].
Free sugars were analyzed by HPLC coupled to a refraction index detector (Knauer, Smartline system 1000). The compounds were identified by chromatographic comparisons with authentic standards (D(−)-fructose, D(+)-sucrose, D(+)-glucose, D(+)-trehalose, and D(+)-raffinose pentahydrate) which were purchased at Sigma-Aldrich (St. Louis, MO, USA), as also melezitose (PanReac AppliChem ITW Reagents Co., Darmstadt, Germany) which was applied as the internal standard (IS) and used in the quantification method. Data was analyzed using Clarity 2.4 software (DataApex, Podohradska, Czech Republic), and the results were expressed in g/100 g fw.
Organic acids were evaluated using an Ultra-Fast Liquid Chromatography (UFLC, Shimadzu 20A series, Kyoto, Japan) coupled to a diode array detector. Organic acids standards (L(+)-ascorbic acid, citric acid, malic acid, oxalic acid, shikinic acid, succinic acid, fumaric acid, and quinic acid; Sigma-Aldrich, St. Louis, MO, USA) were used for identification by performing chromatographic comparisons with the peaks of the samples. These standards were also used for quantification relying on the external standard methodology. Results were expressed g/100 g fw.
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