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Cytochalasin d cyt d

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Cytochalasin D (Cyt D) is a fungal metabolite that acts as a potent inhibitor of actin polymerization. It binds to the barbed ends of actin filaments, preventing further growth and leading to the disruption of the cellular cytoskeleton. Cyt D is commonly used as a research tool in cell biology and biochemistry studies to investigate the role of the actin cytoskeleton in various cellular processes.

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15 protocols using cytochalasin d cyt d

1

Evaluating NETs' Killing of B. parapertussis

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The ability of NETs to kill B. parapertussis was evaluated as previously described [42 (link)] with minor modifications. Briefly, 2×105 neutrophils were seeded in 24 well-plates and then incubated with 100 nM PMA for 1 h at 37°C, to induce NETs. Next, neutrophils were treated or not with 100 μg/ml Cytochalasin D (CytD) (Sigma) to inhibit phagocytosis or with 500 mU/ml MNase I, to breakdown NETs, for 30 min. In control experiments a combination of CytD and MNase I was used. Neutrophil were then incubated with bacteria (MOI:100) for 3 h and further treated with MNase I for 20 min to release the bacteria eventually immobilized by NETs. Neutrophils were further subjected to hypotonic lysis by using 0.1% saponin in sterile deionized water and serial dilutions of lysates were rapidly plated onto bBGA to enumerate the CFU. To confirm that NETs can kill B. parapertussis a microscopic analysis using a LIVE/DEAD Cell Viability Assays Kit (Molecular Probes) was performed according to the manufacturer’s instructions.
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2

Cytochalasin D Cytotoxicity Evaluation

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Cytochalasin D (Cyt D) (Sigma-Aldrich, St. Louis, MO, USA) was used as the inhibitor of actin polymerization. A CCK-8 assay was performed to evaluate the cytotoxicity of Cyt D to EBL cells (Dojindo, Shanghai, China), as previously described [11 (link)]. Briefly, 5 × 103 cells/well were seeded and allowed to grow for 24 h in 96-well plates and then treated with Cyt D (0.1 μM, 0.5 μM, 1 μM, 2.5 μM, 5 μM, 10 μM, or 20 μM) for 24 h. Cells treated with DMSO were used as the negative control, and cells with no treatment were used as the mock group. Next, each well was incubated with 10 μL CCK-8 for 2 h. The light absorption value at 450 nm was detected by the microplate spectrophotometer (PerkinElmer Victor NIVO 3S, Waltham, MA, USA). Each treatment was carried out in three repeats, and all experiments were performed independently three times. After that, the monolayer EBL cells (2 × 105 cells in a 12-well plate) were treated with the selected concentration of Cyt D for 2 h, followed by the addition of 8 μg/mL rMbovP0145 and incubation for more than 12 h. The total RNA was then extracted, and qRT-PCR was used to analyze the expression of IL-8 mRNA.
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3

Culturing BJ Cell Lines for Experimental Analyses

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The cell lines BJ (hTERT-immortalized human non-transformed fibroblast cells), BJ-LT (SV40 large T-antigen (LT)-transfected BJ cells), BJ-LT-Ras (BJ-LT cell transfected with oncogenic HRas mutant) [24 (link)] were cultured in Dulbecco’s modified Eagle medium (DMEM, Gibco, Life technologies, UK) supplemented with 10% fetal bovine serum (FBS, FB-1090–500, Werner Saveen, Biological Industries, Beit-Haemek Ltd, Israel), 100 U/ml penicillin and 0.1 mg/ml streptomycin (complete medium). The cells were kept at 37 °C in a humid atmosphere containing 5% CO2. In some experiments 0.5–5 μM cytochalasin D (CytD, Sigma-Aldrich) were used to induce binucleation. Mitotic cells were collected by the shake off method in which exponentially growing cells were washed once with pre-warmed PBS, followed by incubation in complete medium for approximately 2–3 h, and then the loosely attached mitotic cells were detached by tapping the culture flasks. The cells were collected and re-suspended in fresh complete medium for culturing in either ultra-low attachment plates or on plates coated with fibronectin (40 μg/ml). Since BJ-LT cell had a higher tendency to aggregate via cell–cell contacts, 1.2% methylcellulose (M-7027, Sigma-Aldrich) was included in the culture medium when these cell lines were cultured in suspension in ultra-low attachment wells.
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4

Analyzing Cell Proliferation in Flii Mice

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Primary keratinocytes from Flii+/−, WT and FliiTg/Tg mice skin were plated on glass coverslip in the well of a 6-well plate at a density of 20,000 cells in Epilife medium containing 10 μM BrdU (Sigma-Aldrich, Melbourne, Australia) as previously described [48 (link)]. Glass coverslips were pre-coated with fibronectin and collagen (50 μg/mL, Invitrogen, Australia). BrdU was allowed to incorporate into the DNA synthesis (pulse-process) for a period of 24 hr followed by washing in sterile PBS twice. New Epilife medium containing 5 μM cytochalasin D (cytD) (Sigma-Aldrich, Melbourne, Australia) was added to the cells and allowed to arrest cytokinesis (chase-process) for a period of 24 hr followed by washing in sterile PBS twice.
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5

Actin Cytoskeleton Modulation Experiments

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Normal saline containing 1 mM CaCl2 was the control solution. Cytochalasin-D (Cyt-D; Sigma, St. Louis, MO, USA) was dissolved in DMSO to a 10 mM stock solution kept frozen, and diluted to a final concentration of 10 μM. Jasplakinolide (J7473, Thermo Fisher Sciences) was dissolved in DMSO to 1 mM stock solution and diluted to 500 nM before experiments.
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6

Subcellular Signaling Pathway Analysis

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From Cell Signaling Technology: Phospho-α1-AMPK (Thr172), α1-AMPK, IP3R-1, p53, acetyl-p53, cortactin, Drp1. From BD Laboratories: β-tubulin, IP3R-3. From Sigma: MCU, acetyl-cortactin. From Abcam: Tomm20. Secondary antibodies conjugated with peroxidase were purchased from GE Healthcare Life Science. TMRE, Fluo-4, mitotracker, BAPTA-AM, BCECF-AM, DAPI, and secondary antibodies conjugated with Alexa 488, 546, 633 were from Molecular Probes. Chemicals: methyl-pyruvate, FCCP, oligomycin, rotenone, nicotinamide (NMN), latrunculin B (LatB), cytochalasin D (CytD), and Hanks’ balanced salt solution were purchased from Sigma. EX527 and compound C were purchased from Tocris Bioscience. Xestospongin B was extracted and purified from the marine sponge Xestospongia exigua as described before (Jaimovich et al., 2005 (link)).
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7

Probing Cell Stiffness and Actin

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To study the relationship between cell stiffness and the F-actin cytoskeleton, H9c2 cells were incubated in control or HHC for 72 h and then treated with Cytochalasin D (Cyt. D, C8273 Sigma-Aldrich) in a 10 μM concentration for 30 min at 37 °C. After incubation, force curves were obtained in each case via the nanoindentation method. From each force curve, a value of the cell's Young's Modulus can be obtained; this value indicates the cell's stiffness.
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8

Pharmacological Modulation of Cellular Transport

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Brefeldin A (BFA, REF: 3660755, 10-40nM [24 (link), 32 (link)]), thapsigargin (TG, REF: 3557977, 0.1-100nM [33 (link), 34 (link)]), wortmannin (WORT, REF: W3144, 1µM [35 (link), 36 (link)]) and cytochalasin D (CytD, REF: C2618, 100nM [37 (link), 38 (link)]) were purchased from Sigma-Aldrich (Burlington, Massachusetts, United States). Stock solutions of the compounds were prepared in dimethyl sulfoxide (DMSO; Carl Roth, Karlsruhe, Germany) to enable a 1:1000 dilution for each treatment. Solvent controls were matched to represent the same DMSO content as the treatments. PBS-A was prepared by dissolving 0.4g KH2PO4, 0.4g KCl, 16g NaCl and 5.5g Na2HPO4. 2H2O in 1l autoclaved water and adjusting the pH to 7.2.
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9

Neutrophil Extracellular Killing Assay

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Neutrophils were isolated as described above, and 1 × 106 cells in 100 μL were challenged with bacteria at MOI = 10 bacteria/cell at 37°C for 30 min with rotation. To pinpoint extracellular killing, cells were treated with 10 μg/mL cytochalasin D (cyt. D, Sigma) for 10 min prior to infection to inhibit phagocytosis, in the presence or absence of 500 mU/mL desoxyribonuclease (DNase, Sigma) to evaluate the contribution of DNA-based NETs to bacterial killing. Surviving colony-forming units (CFU) for all killing assays were enumerated by Todd-Hewit agar (THA) dilution plating. Survival was calculated as the percentage of the initial inoculum.
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10

Modulating Dendritic Cell Responses to Bacterial Pathogen

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DCs (2·106 cells/ml) were stimulated with UV-treated USA300 at MOI 10, unless otherwise stated, and incubated at 37°C in 5% CO2 at indicated hours. DCs were treated with 100 µg/ml mannan from Saccharomyces cerevisiae (Sigma-Aldrich, St. Louis, MO, USA) 30 min prior to bacteria stimulation. Prior to bacterial stimulation BMDCs were pre-treated with 0.5 µg/ml cytochalasin D (CytD) (Sigma-Aldrich) for 1 h to inhibit bacterial uptake, with 300 µM apocynin (R&D systems, Minneapolis, MN, USA) for 30 min to inhibit assembly of the NADPH oxidase and ROS production and with 50 nM bafilomycin A1 (BafA) (Sigma-Aldrich) or 40 mM NH4Cl (Sigma-Aldrich) for 1 h to inhibit phagosome acidification. MAPK pathways were inhibited in DCs by pre-treating for 1 h with 25 µM JNK inhibitor (Sigma-Aldrich, SP600125), 10 µM p38 inhibitor (Sigma-Aldrich, SB203580) or 10 µM MEK 1/2 inhibitor (Sigma-Aldrich, UO126). Factors present during inflammation such as GM-CSF (15 ng/ml) or IFN-γ (1 ng/ml, Thermo Fisher Scientific) was added to the medium of DCs just prior to bacterial stimulation.
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