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Xf base medium minimal dmem

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XF Base Medium Minimal DMEM is a defined cell culture medium formulation designed for use in Seahorse XF metabolic assays. It is a minimal DMEM-based medium that supports the measurement of oxygen consumption rate (OCR) and extracellular acidification rate (ECAR) in live cells.

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12 protocols using xf base medium minimal dmem

1

Seahorse Assay for Macrophage Metabolism

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Primed BMDMs plated in Seahorse XFp Cell Culture Miniplate (Agilent Technologies, Santa Clara, CA) were equilibrated in XF Base Medium Minimal DMEM (Agilent Technologies) supplemented with 1 mM pyruvate (Thermo Fisher Scientific Inc.), 25 mM glucose (Sigma) and 2 mM glutamine (Thermo Fisher Scientific Inc.). Then, cells were treated for 30 min with vehicle or febuxostat (200 μM), and stimulated for 90 min with nigericin (2.5 μM). Oxygen consumption rate (OCR) was measured with the Seahorse XFp Extracellular Flux analyzer (Agilent Technologies) by injecting 1 μM oligomycin (Sigma), 1 μM FCCP (abcam, Cambridge, UK), and 0.5 μM antimycin A (abcam)/0.5 μM rotenone (LKT Laboratories, Inc., St. Paul, MN). OCR was expressed as picomoles per minute.
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2

Seahorse XF Metabolic Assay Protocol

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Cells were seeded into Seahorse 96-well XF Cell Culture Microplate V3-PET (Agilent) at 10,000 cells per well in 200 μL media. Cells were cultured in their respective media for 48 h at 37 °C, 5% CO2. After a 48-h incubation period, cells were exposed to ascorbate (50 pmol cell−1) for 1 h. Following treatment, cells were washed gently with media; pre-warmed XF Base Medium Minimal DMEM (Agilent), containing 25 mM glucose, 2 mM Glutamax™ (Thermo Fisher Scientific) and 1 mM sodium pyruvate, with the pH of media being approximately 7.4 and buffer capacity determined prior to each assay; OCR and ECAR were then measured using the Seahorse XF96 analyzer with the standard mitochondrial stress test [38 (link)]. At the end of experiments, cell density (cells L−1) from representative wells was determined with a hemocytometer. Using average of cell density, OCR, and ECAR were then normalized per cell for control and treatment. The basal OCR was calculated from the parameters obtained from the mitochondrial stress test; OCRbasal = OCRATP + OCRproton leak. The basal ECAR was calculated from an average of first three readings of ECAR.
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3

Characterizing Dendritic Cell Metabolism

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Seahorse XFe24 FluxPaks, XF Base Medium Minimal DMEM (0 mM Glucose), Seahorse XF Glycolysis Stress Test Kit, XF Mito Fuel Flex Test kit and XF Cell Mito Stress Test Kit were purchased from Agilent (Santa Clara, California, USA). The characterization of DC metabolism was done as described previously (18 (link)). Briefly, harvested DCs were washed with PBS once, resuspended in assay medium to make 2 million/ml (1~4 million/ml), and 0.1 ml DCs were seeded per well in poly-D-lysine (#P6407, Sigma-Aldrich) coated plate. DCs were equilibrated in CO2-free incubator at 37°C for 30 min. After the medium was topped up to 0.5 ml, the plate was equilibrated in CO2-free incubator at 37°C for another 30 min before being loaded into the machine. The final concentrations of drugs were: 10 mM Glucose, 1 μM Oligomycin, 50 mM 2-DG, 3 μM FCCP, 1 μM Rotenone+ 1 μM Antimycin A, 3 μM BPTES, 4 μM Etomoxir, and 2 μM UK5099.
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4

Mitochondrial Respiration in Fibroblasts

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Mitochondrial respiration was assayed in fibroblasts treated or not treated with 2DG on 24-well XF24e plates, using an XF24e Extracellular Flux Analyzer (Agilent Technologies). Briefly, 5 × 104 cells were seeded approximately 16–24 h before the assay in prewarmed growth medium (DMEM, Gibco) and incubated at 37 °C. Subsequently, the medium was removed and replaced with assay medium (XFBase medium minimal DMEM (Agilent) complemented with 2 mM glucose, 2 mM glutamax and 1 mM pyruvate) and cells incubated for 30 min in a 37 °C non-CO2 incubator. After taking an oxygen consumption rate (OCR) baseline measurement, 1 µM oligomycin, 0.75 µM carbonylcyanide-4-trifluorometho-xyphenylhydrazone (FCCP) and 1 µM rotenone were added sequentially. For the extracellular acidification rate (ECAR) values, the average of the first three measurements of the basal level prior the oligomycin injection was considered.
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5

Mitochondrial Function in Adipocytes

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The oxygen consumption rate and extracellular acidification rate were measured by using a flux analyzer (Seahorse Bioscience XF24 Extracellular Flux Analyzer, Agilent, Santa Clara, CA, USA) and XF Mito Stress Kit (Agilent). 3T3L1 cells were seed at 3.5 × 103 cells per well in 0.1% gelatin-coated Seahorse 24-well plates and differentiated into adipocytes as described above. After differentiation, B. wexlerae culture supernatant or uncultured fresh medium were added to the 3T3L1 adipocyte cultures to a final concentration of 10%; cultures were then incubated at 37 °C for 1 h. After incubation, the culture medium was changed to XF Base Medium Minimal DMEM (Agilent) supplemented with 10 mM glucose (Nacalai Tesque), 1 mM pyruvate (Nacalai Tesque), and 2 mM l-glutamine (Nacalai Tesque) for measurement. Compounds injected during the assay and their final concentrations were 1.5 µM oligomycin (inhibitor of ATP synthase), 1 µM FCCP (proton uncoupling agent), and 0.5 µM rotenone + 0.5 µM antimycin A (inhibitors of the mitochondrial respiration complex). XFe Wave software (Agilent) was used to analyze the results.
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6

Mitochondrial Respiration in Glioblastoma

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Mitochondrial respiration was assayed by measuring the oxygen consumption rate (OCR) in control or SERBP1 overexpressing U343 glioblastoma cells using a Seahorse XFe96 Analyzer (Agilent Technologies). Cells were plated at a concentration of 15,000–20,000 cells/well into XF96 Seahorse plates 2 days before the experiment. Media was changed the next day to low serum media (containing 2%FBS) and the experiment was run the next day using XF Base Medium Minimal DMEM (Agilent Technologies) supplemented with 1 mM sodium pyruvate, 5.5 mM glucose, and 2 mM glutamine. Injections were prepared following the manufacturer’s protocol for the Mito Stress Kit (Agilent Technologies). OCR was normalized to confluence using an IncuCyte® ZOOM phase-only processing module (Essen Bioscience).
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7

Culturing HeLa Cell Lines in Defined Media

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HeLa cells were purchased from the Leibniz Institute DSMZ‐German Collection of Microorganisms and Cell Cultures). The HeLa cells (wildtype, IF1‐KO, and IF1‐H49K‐HA) were cultivated in XF Base Medium Minimal DMEM (Agilent) supplemented with 10% FBS (Fetal bovine serum), 1% HEPES (4‐(2‐hydroxyethyl)‐1‐piperazineethanesulfonic acid), 1% NEAA (non‐essential amino acids), 2% NaHCO3 and either 10 mM D‐Galactose (plus 4 mM alanyl‐l‐glutamine) or 25 mM d‐Glucose (plus 2 mM alanyl‐l‐glutamine) at 37°C and 5% CO2. When confluency was reached, cells were split using 1 ml Trypsin/EDTA for 5 min at 37°C (and 5% CO2).
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8

Monocyte Mitochondrial Respiration Assay

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Twenty five thousand monocytes per well were seeded in a Seahorse XFp cell culture plate and primed as previously described. The oxygen consumption rate (OCR) was evaluated under basal conditions and in response to 2 μM oligomycin, 1.5 μM FCCP, 100 nM rotenone, plus 1 μM antimycin A (all from Sigma-Aldrich). The cells were cultured in XF-medium (XF Base Medium Minimal DMEM; Agilent Technologies) containing 10 mM glucose, 2 mM l-glutamine, and 1 mM sodium pyruvate (all from Sigma-Aldrich). OCR was determined using a Seahorse XFp Analyzer (Agilent), and assays were analyzed with Wave Desktop software (Agilent), as described before (19 (link)).
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9

SGLT2 Inhibitor Effects on Cellular Respiration

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Data were analyzed as change in OCR and ECAR as a function of SGLT2 inhibitor concentration. Effects on cellular respiration and medium acidification was measured with Agilent/Seahorse Extracellular Flux analyzer XF96 at 37 °C. Basal OCR and ECAR were recorded prior to injection of the respective SGLT2 inhibitor to yield final concentrations of 0.2, 1, 5, 25, and 100 µM (n = 4), followed by five repeated measurements of OCR and ECAR (during approximately 35 min). Rotenone (2 µM) was used as reference for the inhibition of the mitochondrial ETC complex I. DMSO was utilized as blank sample. In total, 15,000 and 25,000 HUVEC cells were seeded in 150-microliter cell culture medium per XF96 plate well 18–24 h prior to experiment. XF96 cartridge was equilibrated with calibration buffer overnight according to manufacturer´s instructions. Cell culture medium was changed to XF Base Medium Minimal DMEM (Agilent, Santa Clara, CA, USA) complemented with 5 mM glucose, 1 mM pyruvate, 1 mM glutamine, and 15 mM HEPES 30–40 min prior to first reading. After the last read-out, cells were fixed in 4% formaldehyde, and subsequently washed with 4% formaldehyde prior to adding Hoechst nuclear stain for cell counting with Image Xpress system from Molecular Devices. OCR and ECAR were normalized based on the cell numbers per well.
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10

Evaluating Macrophage Oxygen Consumption

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For 72 h, ESdMs were incubated with LPS ± NaCl (40mM) to stimulate cells. Oxygen consumption rate (OCR) was determined under basal conditions and in response to 2 μM oligomycin, 1.5 μM FCCP, 100 nM rotenone plus 1 μM antimycin A (all Sigma-Aldrich). During OCR measurement activated ESdMs were cultured in XF-medium (XF Base Medium Minimal DMEM (Seahorse)) containing 10 mM glucose, 2 mM L-glutamin, and 1 mM sodium pyruvat (all from Sigma-Adlrich). OCR were evaluated using the Seahorse XFp Extracellular Flux Analyzer (Agilent Technologies) and analysed with Wave Software (Seahorse Bioscience).
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