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Imagestream x mark 2

Manufactured by Merck Group
Sourced in United States, Belgium, Germany

The ImageStream X Mark II is a multi-spectral imaging flow cytometer developed by Merck Group. It combines the capabilities of flow cytometry and microscopy to capture high-resolution images of individual cells or particles while they flow through the system. The ImageStream X Mark II allows for the simultaneous analysis of morphology, location, and fluorescence of cells or particles.

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47 protocols using imagestream x mark 2

1

Intracellular GLUT1 Staining in Activated Cells

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Cells were harvested at 48 hours after activation and intracellular GLUT1 staining was performed. Data was collected using ImageStream X Mark II (Amnis, MilliporeSigma).
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2

Intracellular GLUT1 Quantification

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Cells were harvested at 48 h after activation and intracellular GLUT1 staining was performed. Data were collected using ImageStream X Mark II (Amnis, MilliporeSigma).
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3

Imaging Flow Cytometry of Amoebic Virus Infection

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ImageStream® cytometry analysis and the instrument gating strategy for amoebae was performed as previously described37 (link). Briefly, W. magna trophozoites were infected for 2 h with GFP-RSV at MOI of 100, washed and re-suspended in PBS prior to processing through the ImageStream®X Mark II (Millipore Sigma). Cells were examined at 60× magnification. Analysis was performed using the IDEAS software (Amnis, Seattle) and cells (fluorescent viruses and amoebae) were identified on the basis of bright field morphology, size and GFP signal.
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4

Intracellular Localization of H. pylori in W. magna

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Intracellular locations of GFP-H. pylori in W. magna coculture was performed using ImageStream® cytometry as previously described (Dey et al. 2019 (link)). Briefly, FLA were infected for 2 h with viable spiral GFP-H. pylori at a MOI of 100, washed and re-suspended in PBS prior to processing through the ImageStream®X Mark II (Millipore Sigma). Cells were acquired at 60x magnification. Analysis was performed using the IDEAS software (Amnis, Seattle, USA) and cells were identified on the basis of bright field morphology and size. For the recovering analysis and after 30 min of coinfection with FLA, GFP-H. pylori were gated based on small size and low side scatter (to remove any internal control SpeedBeads® from the gate). They were then further gated based on GFP signal, degree of focus and all doublets/ clumps were removed from the analysis. Spiral and coccoid bacteria were then gated based on Aspect Ratio Intensity (Ch01) and Major Axis Intensity (Ch01) to discriminate between the two bacterial cell morphologies (spiral vs VBNC cell forms). The bacteria gating strategy as previously described (Dey et al. 2019 (link)) and briefly provided in (Supplementary data SD. 2).
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5

Fucosylation Impacts CTL-Target Interaction

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T2 cells were pulsed with E75, PR1 and CG1 peptides (40 ug/mL), were washed and labeled with CellTracker Deep Red Dye (Life Technologies, Thermo Fisher Scientific, Waltham, MA), and were co-cultured with fucosylated and non-fucosylated CTLs at a 1:1 ratio at 37°C. Cells were then fixed in 2% paraformaldehyde, washed, and stained with anti-CD8-FITC (Biolegend) to identify CTLs. Following surface staining, cells were washed, permeabilized using 0.1% Triton-X (Sigma, St. Louis, MO), and stained with phalloidin AlexaFlour 594 (Life Technologies, Thermo Fisher) to visualize actin filaments at the synapse between CTLs and T2 cells. Data were collected on an imaging flow cytometer (ImageStreamXMarkII, Millipore Sigma, Burlington, MA) and analyzed using Ideas Software (Millipore Sigma).
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6

Quantifying Vaccinia Virus Infection by Flow Cytometry

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The percentage of infected cells at different time points post infection was determined with flow cytometry. A total amount of 1 × 106 infected cells were fixed using 1–2% paraformaldehyde for 30 min at 4 °C. Fixed cells were washed once with phosphate buffered saline (PBS) and permeabilized with 0.5% Tween 20 in PBS at 4 °C for 5 min. The cells were immuno-stained with 1:100 diluted FITC-conjugated polyclonal anti-vaccinia antibody (1952402357, quartett GmbH) in staining buffer containing PBS plus 1% foetal calf serum (FCS) for 1–2 h in dark at RT. Using the ImageStream X Mark II (Amnis, EMD Millipore) 10,000 single cells per sample (debris and cell doublets were excluded) were analyzed at a wavelength of 488 nm at 5 mV intensity. Data analysis was performed using the IDEAS and FlowJo software.
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7

Quantifying Autophagy and Ubiquitination in 697 Cells

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Image flow cytometry was explored to quantify the co-localization of E2A/Pbx1 and LC3 or Ubiquitin (Ub). The 697 cells of different treatment groups were collected at the predicted time point. After fixation and permeabilization using the kit (ADG), cells were stained with primary antibody of anti-mouse E2A/Pbx1 and anti-rabbit LC3 or Ub for 30 min, and second antibody of PE anti-mouse and FITC anti-rabbit IgG for 30 min, then cells were explored to ImageStreamX Mark II (Amnis, Merck Millipore, Seattle, WA, USA) for image flow cytometry. Samples were visualized and analyzed for the expression of markers and proteins with IDEAS 6.0 software (Amnis, Merck Millipore). Cells were gated for single cells with the area and aspect ratio features, for focused cells, with the Gradient RMS feature. These subsets were then plotted for log intensities of channel with LC3 (autophagosome marker), Ub (Ubiquitination marker) and channel with E2A/Pbx1. Autophagy level was analyzed with LC3 level by spot count wizard. Co-localization of E2A/Pbx1 and LC3 or Ub was analyzed by the co-localization wizard.
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8

WSSV Virion Labeling and Hemocyte Tracking

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WSSV virions were labeled with FITC (Sigma-Aldrich; 1.24546). The rMindin or tag, together with FITC-WSSV (1 × 106 copies/shrimp), was injected into shrimp hemocoels. The hemolymph was drawn 1 h later into cold anticoagulant (0.45 M NaCl, 10 mM KCl, 10 mM EDTA, and 10 mM HEPES, pH 7.45) and centrifuged at 800 × g for 10 min at 4°C to obtain hemocytes. One part of the hemocytes was resuspended in PBS and detected using flow cytometry (ImageStreamX Mark II; Merck, Kenilworth, NJ, USA). The other part was placed onto poly-l-lysine-coated glass slides and washed three times with PBS. The nuclei were labeled with 4′,6-diamidino-2-phenylindole (DAPI; AnaSpec, San Jose, CA, USA; AS-83210) for 10 min at room temperature. The slides were observed using an Olympus SpinSR10 confocal microscope (Olympus, Tokyo, Japan). The percentage of virus-positive cells was determined by counting the cells. Four visual fields were selected, and the number of cells in each visual field was not less than 100.
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9

Phagocytosis Assay with Macrophages and MOLM-13 Cells

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Phagocytosis assay was performed as described previously [53 ]. Briefly, isolated monocytes were stained with PKH67 (Sigma-Aldrich) according to the manufacturer's instructions and differentiated to macrophages by 20 ng/ml Macrophage-Colony Stimulator Factor (M-CSF) (R&D Systems) in X-VIVO 10 medium (Lonza) supplemented with 10% autologous serum. MOLM-13 cells were stained with PKH26 (Sigma-Aldrich) following the manufacturer's instructions and incubated in a 1:2 E:T ratio with licMABs or mAb concentrations ranging from 0.01 nM to 100 nM for 2 h. Polybead® Carboxylate Red-Dyed Microspheres of 6 μm (Polysciences) were used as a positive control and incubation either at 4°C or at 37°C in the presence of 10 μM Cytochlasin D (Sigma-Aldrich) served as a negative control. Cells were harvested, measured by imaging flow cytometry using an ImageStream®X Mark II instrument (Merck Millipore, Billerica, Massachusetts, USA) and analyzed with IDEAS® and INSPIRE® Software (Merck Millipore, Billerica, Massachusetts, USA). The maximum phagocytosis value was set to 100% and all data points were normalized accordingly. Mean values and standard errors of triplicates were calculated and plotted.
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10

Imaging Flow Cytometry of sEVs

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MB488+ sEVs were stained with antibodies for 30 minutes at RT, resuspended in PBS up to 200 μL, filtered (0.22 μm), and incubated at 4°C overnight before acquisition with the ImageStreamX Mark II imaging flow cytometer (EMD Millipore). Stained MB488+ sEVs were acquired by setting the imaging flow cytometer as previously published (57 ). Briefly, the instrument was set to low-speed/high-sensitivity mode (60× magnification), and the power for the used lasers was set to the maximum.
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