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8 protocols using a16891

1

Immunofluorescence Analysis of COL1A1

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Treated A549 cells were fixed with 4% paraformaldehyde for 30 min and permeabilized by 0.5% Triton X-100 for 30 min, followed by blocking in 3% BSA for 30 min. Cells were then incubated overnight at four degrees with primary antibodies (1:100, A1011, ABclonal, Wuhan, China), anti-COL1A1 (1:100, A16891, ABclonal, Wuhan, China). Fluor® 488 (1:100, ab150077, Abcam, Cambridge, UK) was then incubated with Alexa-conjugated IgG for 1 h. Nuclei were stained with DAPI. Cells were observed by laser confocal microscopy (Olympus, Tokyo, Japan).
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2

Alix Staining of HG-HDFs with SAPs

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For Alix staining, HG‐HDFs were co‐incubated with SAPs (3 mm), SAPs+NC, SAPs+si‐6, and SAPs+si‐5 for 48 h, respectively. Then, HG‐HDFs were fixed with 4% paraformaldehyde and permeabilized with 0.2% triton X‐100 (Sigma, 93443). Next, the surface of HG‐HDFs was blocked with 1% bovine serum albumin (BSA) for 1 h and incubated at 4 °C overnight with the primary antibody and with the secondary antibody at RT for 60 min. For immunofluorescence histochemistry staining of COL1A1, CD31, α‐SMA, and FTH1, after the procedures of dewaxing and hydration, the antigen repair of sections was conducted using the microwave thermal and citrate buffer. After that, the sections were incubated with anti‐CD31 (1:100, Abcam, ab281586), COL1A1 (1:100, Abclonal, A16891), α‐SMA (1:100, Abclonal, A17910), and FTH1 (1:200, CST, 4393) at 4 °C for 12 h.
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3

Protein Expression Analysis in Cell Lysates

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Cells were lysed with RIPA lysis buffer (MA0151, meilunbio, Wuhan, China) containing protease inhibitor on ice. Protein extracts (30 µg) were separated by electrophoresis on SDS-polyacrylamide gels, then transferred to PVDF membrane, blocked with milk for 1 h at room temperature, and then incubated with antibodies overnight. Wash three times using TBST. Add secondary antibody (1:5000, AS014, ABclonal, Wuhan, China) and incubate at room temperature for 1 h. Use TBST to wash after imaging on a chemiluminescence imaging system (Thermo Fisher Scientific, Massachusetts, USA). The following antibodies were used: Anti-GAPDH (1:1000, AC002, ABclonal, Wuhan, China), Anti-TGF-β1 (1:1000, A21244, ABclonal, Wuhan, China), Anti-ACE2 (1:1000, AC002, ABclonal, Wuhan, China), Anti-USP4 (1:1000, A20005, ABclonal, Wuhan, China), Anti-COL1A1 (1:1000, A16891, ABclonal, Wuhan, China), Anti-ACTA2 (1:1000, A1011, ABclonal, Wuhan, China), Anti-Vimentin (1:1000, A19607, ABclonal, Wuhan, China), Anti-E-Cadherin (1:1000, A20798, ABclonal, Wuhan, China).
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4

Protein Quantification and Western Blot Analysis

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Protein was extracted and quantified using RIPA buffer (P0013B, Beyotime, China). Then the protein mixture was centrifuged at 12,000 × rpm for 20 min at 4 °C. BCA protein assay kit (Beyotime, China) was used to detect protein concentration. Protein (50 μg) was subjected to 12% SDS-PAGE and transferred to PVDF membrane (Millipore, USA). Membranes were incubated with the primary antibodies for 18 h at 4 °C. Primary antibodies included COL1A1 (1:1000, A16891, ABclonal, USA), SM22 (1:1000, A6760, ABclonal, USA), AGO2 (1:1000, C34C6, CST, USA), mTOR (1:1000, 7C10, CST, USA), ACE2 (1:1500, ab108252, Abcam, USA), Mdm2 (1:1000, ab259265, Abcam, USA), Ube2n (1:1000, ab25885, Abcam, USA), Uba1 (1:2000, ab264179, Abcam, USA), and GAPDH (1:4000, ab8245, Abcam, USA). HRP-conjugated secondary antibodies were incubated with the membranes for 2 h at room temperature. ECL was used to detect the immunoreactive bands, and densitometry of the blots was analyzed by ImageJ software.
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5

Decalcification and Immunostaining of Skull Samples

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The skull samples were fixed with 4% PFA and immersed in 0.5 M EDTA (pH 8.0) for at least 14 days to be decalcified. Then embedded samples were longitudinally sliced into 5-μm thickness. For immunostaining, sections were exposed to primary antibodies against collagen 1 (1:100; ABclonal, A16891) overnight at 4°C. Following this, sections were immersed in secondary antibodies and incubated at 37°C for 30 min. Hematoxylin counterstaining was then performed.
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6

Quantifying COL1A1 expression in co-culture

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Protein expression of COL1A1 in each group was detected with confocal microscopy (LEICA TCS SP8) after coculture for 1 and 7 days. The samples were fixed with 4% paraformaldehyde, sealed with 10% goat serum (B900780, Proteintech, Wuhan, China), and then incubated overnight with primary antibody (COL1A1, A16891, ABclonal, Wuhan, China) 1:100. After rewarming at room temperature, the samples were incubated with secondary anti-rabbit IgG (AS039, ABclonal, Wuhan, China) 1:200 for 1 h. Subsequently, nuclei were stained using DAPI. Each sample randomly selected 3 vision, and each group of 3 samples, a total of 2 time nodes, measured 18 vision.
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7

Western Blot Analysis of Protein Markers

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Total proteins were separated on 7.5% SDS-PAGE at 60-100 V for 2 h, and then transferred to PVDF membrane (Millipore, USA) at 300 mA for 1.5 h. The membranes were blocked with 5% non-fat dry milk for 1.5 h at room temperature. Next, membranes were incubated with primary antibodies at 4°C overnight and secondary antibodies at room temperature for 2 h. The primary antibodies included: rabbit anti-α-SMA (1:1000, ab32575, Abcam), rabbit anti-Col1a1 (1:1000, A16891, ABclonal), rabbit anti-Col3α1 (1:1000, A3795, ABclonal), rabbit anti-β-tubulin (1:1000, #2128, CST), rabbit anti-CD63 (1:1000, ab217345, Abcam), rabbit anti-CD81 (1:1000, ab109201, Abcam), anti-TSG101 (1:1000, ab125011, Abcam), rabbit anti-β-catenin (1:1000, #8480, CST), and rabbit anti-APC (1:1000, ab40778, Abcam). All blots were visualized using the ECL reagent Kit (Millipore Corp, USA). The blot intensities were quantified with Image J software.
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8

Immunofluorescence Staining of MSCs and HGFs

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MSC(AT)s were seeded in 24-well plates and incubated in a complete medium. After MSC(AT)s reached ~50% confluency, they were prepared for IF staining. HGFs were seeded in 24-well plates and divided into four groups (see Section 4.6, Cell migration assay). For cell IF staining, cells were washed with PBS three times and fixed with 4% paraformaldehyde for 15 min, after which they were treated with 0.1% Triton X-100 for 20 min, blocked by 5% normal goat serum for 30 min at RT, and incubated at 4 °C overnight with antibodies, COL1A1 (A16891, Abclonal, Wuhan, China), IL-1RA (ab124962, Abcam, Cambridge, UK), and FN (A16678, Abclonal, China). The next day, cells were rewarmed at room temperature (RT) for 30 min and incubated with secondary antibodies (ab96899, Abcam, Cambridge, UK or ZLI-0316, ZSGB-BIO, China) for 1 h. After being washed with PBS three times for 5 min each, they were stained with a fluorescent mounting medium with DAPI. Images were acquired with an Olympus microscope (Olympus Corporation, Tokyo, Japan).
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