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23 protocols using gsdmd n

1

Molecular Mechanisms of Pyroptosis Regulation

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D-glucose and the JNK inhibitor SP600125 were obtained from Sigma (St. Louis, USA). The RPMI 1640 medium was purchased from Thermo Fisher (Carlsbad, USA) and DMEM-F12 medium was obtained from Corning (Steuben County, NY, USA). Fetal bovine serum (FBS) was purchased from GIBCO Invitrogen (Carlsbad, CA, USA). IFN-γ was obtained from MedChem Express (New Jersey, USA). The antibodies against GSDMD, GSDMD-N, JNK, and p-JNK were purchased from Abcam (Cambridge, UK), while the antibody against cleaved caspase-3 was obtained from Cell Signaling Technology (Beverly, USA). The antibodies against synaptopodin, Bax, Bcl-2, SOD2, TNF-α, IL-1β, IL-6, and β-actin were purchased from Proteintech (Chicago, USA).
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2

Immunoblotting analysis of inflammasome proteins

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Equivalent samples were separated via 10% SDS-PAGE, followed by transfer to PVDF membranes and blocking in 5% skimmed milk. Subsequently, the membranes were probed with primary antibodies against NLRP3 (Abcam), GSDMD-N (Abcam), caspase-1 (Cell Signaling Technology, Inc.), IL-1β (Abcam), IL-18 (Abcam), FTO (Cell Signaling Technology, Inc.), or GAPDH (Cell Signaling Technology, Inc.) at 4°C overnight, followed by treatment with the appropriate secondary antibodies. The protein bands were visualized using achemiluminescence system kit (Thermo Fisher Scientific, Inc.). The intensity of the bands was analyzed using ImageJ software. GAPDH served as an internal reference.
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3

Western Blot Analysis of HUVEC Proteins

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As usual, HUVECs were seeded in 6-well plates at a density of 2 × 105 cells/well. After treatment, the HUVECs were analyzed using Western blotting [24 (link)]. Briefly, the cells were lysed with RIPA buffer containing 1% proteinase inhibitor, PMSF, at 4 ℃. Then, the samples underwent centrifugation for 10 min at 4 ℃, the supernatant was collected, and the protein concentration was measured with a BCA kit (Beyotime, Shanghai, China). The protein samples were separated by SDS–polyacrylamide gel electrophoresis and transferred onto a poly(vinylidene fluoride) (PVDF) membrane. After the membrane was blocked with 5% nonfat milk for 1 h at room temperature, it was incubated with primary antibodies against CHOP (Beyotime, Shanghai, China), Casp1 p20 (Cell Signaling Technology, MA, USA), GDF11, LOX-1, NLRP3, IL-1β, GSDMD-N, or GRP78 (Abcam, Cambridge, UK) at 4 °C overnight. This step was followed by incubation with a secondary antibody for 1 h at 37 °C. The proteins were scanned using the Odyssey Imaging System, and the band intensities were quantified using ImageJ. GAPDH (Abcam, Cambridge, UK) was used as an internal control. The protein expression levels of NLRP3, Casp1 p20, and IL-1β in the harvested artery specimens were also determined using Western blotting.
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4

Protein Expression Analysis in Adenoid and Nasal Epithelial Cells

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Total protein was extracted from adenoid tissues and HNEpC cells using RIPA lysis buffer (Beyotime Institute of Biotechnology). Following mixing with SDS lysis buffer and boiling, the protein content in cell lysates were measured using BCA Protein Assay reagent (Pierce; Thermo Fisher Scientific, Inc.). Equal amounts of protein (30 µg) were loaded onto 12% SDS-PAGE and separated via electrophoresis, then separated proteins were transferred to PVDF membranes. Following blocking in 5% skimmed milk at room temperature for 2 h, membranes were incubated overnight with primary antibodies against IL-32 (cat. no. ab37158; 1:1,000; Abcam), NLRP3 (cat. no. ab263899; 1:1,000; Abcam), IL-1β (cat. no. ab216995; 1:1,000; Abcam), caspase-1 (cat. no. ab207802; 1:1,000; Abcam), GSDMD-N (cat. no. ab215203; 1:1,000; Abcam), NOD1 (cat. no. ab189435; 1:1,000; Abcam), NOD2 (cat. no. ab31488; 1:500; Abcam), Toll-like receptor 4 (TLR4; cat. no. ab13556; 1:500; Abcam) and GAPDH (cat. no. ab8245; 1:5,000; Abcam). Membranes were then incubated with goat anti-rabbit IgG (cat. no. ab6721; Abcam; 1:2,000) or goat anti-mouse IgG (cat. no. ab6789; Abcam; 1:2,000) secondary antibodies at room temperature for 2 h. Proteins were then visualized using a gel imaging system (Amersham; Cytiva). Protein expression levels were semi-quantified using Image-Pro Plus software (version 6.0; Media Cybernetics, Inc.).
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5

Protein Expression Analysis of Sciatic Nerve

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The total protein of sciatic nerve tissue was extracted. First, the nucleus protein was extracted by nucleus protein extraction kit (Beyotime Bio, China). The content was detected by BCA protein detection kit (Thermo, Waltham, MA) according to the instructions. Then, the protein (30 µg/samples) with 10% SDS-PAGE was isolated and transferred to the PVDF membrane, sealed in 5% skim milk under 25°C for 1 h, and incubated with primary NF-B P65 (1:2000, Abcam Biotech, Cambridge, MA, USA), Caspase1 (1:1000, Abcam), Pro-Caspase1 (1:1000, Cusabiao, Wuhan, China), GSDMD-N (1:1000, Abcam), Klotho (1:1000, Abcam), NLRP3 (1:1000, Abcam), GAPDH (1:2500, Abcam) and H3 (1:2000, Abcam). And then, it was incubated with horseradish peroxidase (HRP)-conjugated secondary antibody (Beyotime, Shanghai, China) for 1 h. After that, protein bands were detected with a ECL detection kit (Beyotime Biothech, Shanghai, China), GAPDH or H3 was taken as control.
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6

Mitochondrial Dynamics and Inflammasome Activation in Lung Tissue

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To assess the protein expression levels of TRPV4, NLRP3, Caspase-1, GSDMD, GSDMD-N, GSDMD-C, dynamin-related protein 1 (DRP1), mitochondrial fission factor (MFF), OPA1 mitochondrial dynamin like GTPase (OPA1), and mitofusin 2 (MFN2), lung tissue or 16HBE cells were lysed and equal amount of protein was subjected to 8 or 10% SDS-PAGE, subsequently, protein was transferred to 0.22 μm PVDF membranes (Merck-Millipore, Carrigtwohill, Ireland). The membranes were blocked with 5% non-fat milk powder and then incubated with antibodies overnight at 4°C: GAPDH, β-actin, DRP1, MFF, OPA1, MFN2 (1:1,000, Cell Signaling Technology, Danvers, MA, United States), Caspase-1, NLRP3 (1:1,000, RD system, Minneapolis, MN, United States), GSDMD, GSDMD-N, and GSDMD-C (1:1,000, Abcam, Cambridge, United Kingdom).
Membranes were then washed and incubated with HRP-conjugated donkey anti-mouse IgG or antirabbit IgG antibody for 1 h at RT. Finally, membranes were visualized with enhanced chemiluminescence (MerckMillipore, Carrigtwohill, Ireland). Quantitative images were analyzed using Image J software.
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7

Western Blot Analysis of Ferroptosis Markers

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The protein was extracted and lysed in RIPA buffer (ThermoFisher Scientific, Waltham, USA), and the proteins in these extracts were separated using 12% SDS-PAGE. Then, the separated proteins were transferred to PVDF membranes (ThermoFisher Scientific, Waltham, USA). The membranes were blocked by incubation with 5% skim milk powder for 1.5 h. The membranes were incubated with primary antibodies against GPX4, SLC7A11, SLC3A2, ACSL4, TFR1, DMT1, Bax, Bcl-2, c-caspase-3, c-caspase-1, NLRP3, GSDMD-N and GAPDH (1:1000, Abcam) at 4 °C overnight. Next day, the blot was incubated with a horseradish peroxidase-conjugated secondary antibody (1:5000, Abcam) at room temperature for 1.5 h. Finally, the blots were incubated with ECL reagents (Amersham Pharmacia Biotech, Inc, USA) and visualized using Image J software (GE).
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8

Punicalin Attenuates NLRP3 Inflammasome

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Cell culture was purchased from GIBCO (USA); The antibodies were as follows: NLRP3 (Cat#AG-20B-0014-C100), and ASC (AG-25B-0006A) were from Adipogen, San Diego, CA, USA, Caspase-1 (Cat. No.: 22915-1-AP) was from Proteintech, Chicago, USA, GSDMD-N (ab209845) was acquired from Abcam (Cambridge, USA); The Cell Whole Protein Extraction Kit and the BCA Protein Content Detection Kit were bought from KeyGEN BioTECH (Beijing, China). Calcein-AM and PI were purchased from Tongren Chemical (Beijing, China); IL-1β and IL-18 kits were purchased from Boster Biological Technology (Wuhan, China). Punicalin (purity 98.4%, batch, 20180706) was from Chengdu Herbpurify Co. Ltd (Chengdu, China); LPS, ATP, and N-Acetylcysteine (NAC) were bought from Netotime (Beijing, China). LPS and NAC were prepared as a 0.5 μg/mL stock solution in PBS (HyClone, USA), filter-sterilized, and stored at −20°C for up to two weeks.
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9

Paraffin-Embedded Tissue Immunostaining

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Tissue sections (4 µm) were fixed with 4% paraformaldehyde for 24 h and then embedded in paraffin for the following experiments. The sections were deparaffinized in xylene for 20 min and then washed with deionized water for 5 min. Then, the sections were treated with 10 nM citrate buffer and subsequently incubated with primary antibodies against Ki67 (1:1,000; cat. no. ab15580; Abcam) and GSDMD-N (cat. no. ab215203; Abcam). These slices were then incubated with the corresponding secondary antibody. Sections were observed and imaged under an inverted microscope (Leica Microsystems, Inc.).
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10

Immunohistochemical Analysis of TRPV4 and Gasdermin in Lung Tissues

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Lung tissues were cut into 5 μm sections, incubated in 0.3% H2O2-CH3OH for 15 min for blocking endogenous peroxidase activity, then treated with citrate buffer (pH 6.0) using a microwave oven for 15 min to retrieve antigen, and followed by blocking with 5% bovine serum albumin for 30 min at room temperature (RT). Subsequently, the tissues were incubated overnight with antibodies against TRPV4 (1:100, Alomone labs, Jerusalem, Israel), human gasdermin D (GSDMD) (1:200, Abcam, Cambridge, United Kingdom), mouse GSDMD (1:1,500, Bioss Biotechnology Co., Ltd, Beijing, China), human gasdermin D N-terminal fragment (GSDMD-N) (1:400, Abcam), and mouse gasdermin D C-terminal fragment (GSDMD-C) (1:400, Abcam). The tissues were then incubated with horseradish peroxidase (HRP)-conjugated goat anti-rabbit IgG (ZSGB-Bio, Beijing, China) at 37°C for 30 min. Finally, slides were visualized by staining with a 3,3′-Diaminobenzidine (DAB) detection system kit (ZSGB-Bio). Images were photographed by a microscope and analyzed by Image-Pro Plus 6.0 software (Media Cybernetics, MD, United States).
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