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10 protocols using ab184955

1

Western Blot Analysis of Synaptic Proteins

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Samples of collected tissues and cultured cells were prepared into a homogenate and centrifuged to collect the protein supernatant. Then, after quantifying protein concentrations by using a BCA assay kit (Pierce Biotechnology, Rockford, IL), an appropriate amount of sample protein was resolved by 10% denaturing SDS-PAGE and transferred onto PVDF membranes (Millipore, Bedford, MA), which were then blocked at room temperature for 1 h by using an Odyssey blocking reagent (Li-Cor, Lincoln, NE), incubated overnight in a 4 °C fridge with anti-SIN3A primary antibodies (ab129087, 1:1000 dilution, Abcam, Cambridge, MA), anti-Arc primary antibodies (ab18950, 1:1000 dilution, Abcam, Cambridge, MA), anti-Egr1 primary antibodies (ab133695, 1:1000 dilution, Abcam, Cambridge, MA), anti-Homer1 primary antibodies (ab184955, 1:1000 dilution, Abcam, Cambridge, MA) and anti-Narp primary antibodies (ab191563, 1:1000 dilution, Abcam, Cambridge, MA) and further incubated with HRP-conjugated secondary antibodies (ab6721, 1:2000 dilution, Abcam, Cambridge, MA). The relative protein expression was analyzed using an Odyssey imaging system (Li-Cor, Lincoln, NE).
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2

Protein Expression Analysis in Colorectal Cancer

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Proteins from colorectal cancer cell lines were extracted with lysis buffer follow instructions (Nanjing KeyGen Biotech Co., Ltd., Nanjing, China). The BCA Protein Assay kit (Nanjing KeyGen Biotech Co., Ltd., Nanjing, China) was applied to detect the protein concentration. Protein lysate was separated on SDS-PAGE gels and transferred subsequently onto polyvinylidene fluoride membranes (EMD Millipore). TBS containing 0.1% Tween-20 was performed to block the membrane. Then, membranes were incubated with rabbit anti Homer1 monoclonal antibody (ab184955; Abcam, Cambridge, MA, USA), G3BP1 (ab181150; Abcam, Cambridge, MA, USA) or GAPDH (cat. no. T0004; 1:5000; Affinity Biosciences) overnight, and were cultured with goat anti-rabbit IgG horseradish peroxidase-conjugated secondary antibodies (1:5000; cat. no. SA00001-2; ProteinTech Group, Inc., Chicago, IL, USA) for 2 h at 37°C. Enhanced chemiluminescence (ECL) reagents (cat. no. KGP1127; Nanjing KeyGen Biotech Co., Ltd) were utilized to reveal protein bands. The protein levels were normalized to the GAPDH protein levels.
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3

Quantitative Analysis of Homer Proteins

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Tissue samples were lysed using RIPA buffer (Beyotime, Shanghai, China) with protease inhibitor cocktail (Sigma). A Bicinchoninic Acid Protein Assay Kit (Thermo Fisher) was used for protein quantification. The same amount (50 μg/lane) of protein was separated from SDS-PAGE and blotted onto PVDF membranes followed by incubation with the primary antibodies against Homer1 (1/1000; ab184955; Abcam), Homer2 (1/1000; PA5-70,541; Invitrogen), Homer3 (1/2000; PA5-79,384; Invitrogen), GAPDH (1/2500; ab9485; Abcam) overnight at 4°C. Next, samples were incubated with the secondary antibodies at room temperature for 2 h. GAPDH served as an internal control. Protein visualization was performed with an ECL chemiluminescence kit (Thermo Fisher). The ImageJ version 1.8.0 software (National Institutes of Health) was used to quantify each protein band.
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4

Western Blot Analysis of Neural Proteins

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Equal amounts of protein (30 μg) were loaded onto 10% (W/V) sodium dodecyl sulfate–polyacrylamide gel electrophoresis and electrophoresed. The proteins were transferred onto PVDF membrane (Millipore) and incubated with the primary antibodies of MEGF10 (1:700, A10508, ABclonal, MA), MERTK (1:700, AF591, R&D, MN), SYP (1:800, ab52636, Abcam), Homer-1 (1:800, ab184955, Abcam) and β-actin (1:1000, MA5–15739, Invitrogen) at 4 °C overnight. The membrane was washed in TBST buffer and incubated with horseradish peroxidase (HRP)-conjugated anti-rabbit or anti-mouse IgG (1:5000, Invitrogen) for 1 hr at RT, and then reacted with an enhanced chemiluminescence substrate (Meilunbio, Shanghai, China). The result of chemiluminescence was recorded and semi-quantified using the ImageJ software (NIH, Bethesda, MD). Bright-field image and chemiluminescent blots are merged using Tanon GIS software (www.Bio-tanon.com.cn).
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5

Multiprotein Imaging in Brain Tissue

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After the selection of DG- and BLA-containing tissue sections, washings with PBS and antigen retrieval technique proceedings were carried out as described previously. Unspecific bindings were blocked with BSA solution (3% in 0.3% of Triton-X-100 in PBS for 90 min, RT). Sections were incubated for 48 h at 4 °C with gentle agitation with guinea pig polyclonal anti Arc (156 004; 1:1500; Synaptic Systems, Goettingen, Germany), mouse monoclonal anti GluN1 antibody (32-0500; 1:100; Thermo Fischer Scientific) and rabbit monoclonal anti Homer1 (ab184955; 1:150; Abcam). Later, brain tissue samples were incubated with the following secondary antibodies: anti-mouse conjugated with Alexa Fluor 555 (A-31570, 1:1000, Invitrogen), anti-guinea pig conjugated with Alexa 488 (A-11073, 1:1000, Invitrogen), and anti-rabbit conjugated with Alexa 647 (A-31573; 1:1000, Invitrogen) for 4 h, as described in the previous section. Sections were also incubated with DAPI (1:25,000) for 1 min and mounted with ProLong Gold (Invitrogen) in gelatinized slides.
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6

Detection of Homer1 in Auditory Cortex

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Auditory cortices were identified according to a previous study [29 ]. Tissues within the anterior and posterior ectosylvian sulci (roughly delineating A1) were dissected. RNA was isolated from tissues as a previous study described [30 (link)]. Combined in situ hybridization and immunohistochemistry method was used for detection of existence of Homer1 mRNA and protein in auditory cortex according to a previous study [31 (link)]. The primary antibody against Homer1 protein (1:500, ab184955) and the secondary antibody (1:100, ab7090) used in the immunohistochemistry was purchased from Abcam.
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7

Western Blot Analysis of Neuronal Proteins

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Samples of collected tissues and cultured cells were prepared into a homogenate and centrifuged to collect the protein supernatant. Then, after quantifying protein concentrations by using a BCA assay kit (Pierce Biotechnology, Rockford, IL), an appropriate amount of sample protein was resolved by 10% denaturing SDS-PAGE and transferred onto PVDF membranes (Millipore, Bedford, MA), which were then blocked at room temperature for 1 h by using an Odyssey blocking reagent (Li-Cor, Lincoln, NE), incubated overnight in a 4 o C fridge with anti-SIN3A primary antibodies (ab129087, 1:1000 dilution, Abcam, Cambridge, MA), anti-Arc primary antibodies (ab18950, 1:1000 dilution, Abcam, Cambridge, MA), anti-Egr1 primary antibodies (ab133695, 1:1000 dilution, Abcam, Cambridge, MA), anti-Homer1 primary antibodies (ab184955, 1:1000 dilution, Abcam, Cambridge, MA) and anti-Narp primary antibodies (ab191563, 1:1000 dilution, Abcam, Cambridge, MA) and further incubated with HRP-conjugated secondary antibodies (ab6721, 1:2000 dilution, Abcam, Cambridge, MA). The relative protein expression was analyzed using an Odyssey imaging system (Li-Cor, Lincoln, NE).
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8

Western Blot Analysis of Neural Proteins

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Samples of collected tissues and cultured cells were prepared into a homogenate and centrifuged to collect the protein supernatant. Then, after quantifying protein concentrations by using a BCA assay kit (Pierce Biotechnology, Rockford, IL), an appropriate amount of sample protein was resolved by 10% denaturing SDS-PAGE and transferred onto PVDF membranes (Millipore, Bedford, MA), which were then blocked at room temperature for 1 h by using an Odyssey blocking reagent (Li-Cor, Lincoln, NE), incubated overnight in a 4 o C fridge with anti-SIN3A primary antibodies (ab129087, 1:1000 dilution, Abcam, Cambridge, MA), anti-Arc primary antibodies (ab18950, 1:1000 dilution, Abcam, Cambridge, MA), anti-Egr1 primary antibodies (ab133695, 1:1000 dilution, Abcam, Cambridge, MA), anti-Homer1 primary antibodies (ab184955, 1:1000 dilution, Abcam, Cambridge, MA) and anti-Narp primary antibodies (ab191563, 1:1000 dilution, Abcam, Cambridge, MA) and further incubation with HRP-conjugated secondary antibodies (ab6721, 1:2000 dilution, Abcam, Cambridge, MA). The relative protein expression was analyzed by using an Odyssey imaging system (Li-Cor, Lincoln, NE).
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9

Western Blot Analysis of Neuronal Proteins

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Samples of collected tissues and cultured cells were prepared into a homogenate and centrifuged to collect the protein supernatant. Then, after quantifying protein concentrations by using a BCA assay kit (Pierce Biotechnology, Rockford, IL), an appropriate amount of sample protein was resolved by 10% denaturing SDS-PAGE and transferred onto PVDF membranes (Millipore, Bedford, MA), which were then blocked at room temperature for 1 h by using an Odyssey blocking reagent (Li-Cor, Lincoln, NE), incubated overnight in a 4 o C fridge with anti-SIN3A primary antibodies (ab129087, 1:1000 dilution, Abcam, Cambridge, MA), anti-Arc primary antibodies (ab18950, 1:1000 dilution, Abcam, Cambridge, MA), anti-Egr1 primary antibodies (ab133695, 1:1000 dilution, Abcam, Cambridge, MA), anti-Homer1 primary antibodies (ab184955, 1:1000 dilution, Abcam, Cambridge, MA) and anti-Narp primary antibodies (ab191563, 1:1000 dilution, Abcam, Cambridge, MA) and further incubated with HRP-conjugated secondary antibodies (ab6721, 1:2000 dilution, Abcam, Cambridge, MA). The relative protein expression was analyzed using an Odyssey imaging system (Li-Cor, Lincoln, NE).
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10

Immunohistochemical Analysis of Synaptic Proteins

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After the selection of DG-and BLA-containing tissue sections, washings with PBS and antigen retrieval technique proceedings were carried out as described previously. Unspecific bindings were blocked with BSA solution (3 % in 0.3 % of Triton-X-100 in PBS for 90 min, RT). Sections were incubated for 48 h at 4 ºC with gentle agitation with guinea pig polyclonal anti Arc (156 004;
1:1500; Synaptic Systems ® , Goettingen, Germany), mouse monoclonal anti GluN1 antibody (32-0500; 1:100; ThermoFischer, Massachusetts, USA) and rabbit monoclonal anti Homer1 (ab184955; 1:150; Abcam). Later, brain tissue samples were incubated with the following secondary antibodies: anti-mouse conjugated with Alexa Fluor 555 (A-31570, 1:1000, Invitrogen), anti-guinea pig conjugated with Alexa 488 (A-11073, 1:1000, Invitrogen) and anti-rabbit conjugated with Alexa 647 (A-31573; 1:1000, Invitrogen) for 4 h, as described in the previous section. Sections were also incubated with DAPI (1:25000) for 1 min and mounted with ProLong® Gold (Invitrogen) in gelatinized slides.
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