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Mirna first strand cdna synthesis kit

Manufactured by Accurate Biology
Sourced in China

The MiRNA first-strand cDNA synthesis kit is a laboratory tool used for the reverse transcription of microRNA (miRNA) molecules into complementary DNA (cDNA). This kit provides the necessary reagents and protocols for the conversion of miRNA into cDNA, which can then be used for further analysis or downstream applications.

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7 protocols using mirna first strand cdna synthesis kit

1

Quantifying miR-4443 and MMP2 Expression

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Total RNA was extracted from tissue samples or cells by TRIzol reagent (Invitrogen, United States), and a NanoDrop ND-2000 spectrophotometer (Thermo Fisher Scientific, United States) was used to measure the concentration and purity of total RNA. Subsequent qRT–PCR was performed using a QuantStudio 7 Flex instrument (Thermo Fisher Scientific, United States). .Reverse transcription of miR-4443 and MMP2 were performed using a miRNA First Strand cDNA Synthesis Kit (Accurate Biology, China) and TransScript All-in-One First-Strand cDNA Synthesis SuperMix for qPCR (TransGen, China), respectively. The expression of miR-4443 and MMP2 were examined with SYBR Green Premix Pro Taq HS qPCR Kit (Accurate Biology, China) and were normalized to small nuclear RNA U6 and 18S RNA expression as respective internal reference. Primers for mRNA expression are shown in Table 2. The relative expression levels of miR-4443 and MMP2 were calculated by using the comparative Ct method.

Primers used in qRT-PCR analysis.

GenesPrimersSequence (5’-3’)
hsa-miR-4443ForwardGCTTGGAGGCGTGGGTTTTA
 Reverse#
U6ForwardGGAACGATACAGAGAAGATTAGC
 ReverseTGGAACGCTTCACGAATTTGCG
MMP2ForwardTACAGGATCATTGGCTACACACC
 ReverseGGTCACATCGCTCCAGACT
18SForwardGTAACCCGTTGAACCCCATT
 ReverseCCATCCAATCGGTAGTAGCG

#The 3’ primer of hsa-miR-4443 was provided by the miRNA First-Strand cDNA Synthesis Kit (Accurate Biology, China).

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2

Gene Expression Analysis by qPCR

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According to the manufacturer’s protocol, TRIzol reagent (Thermo Fisher Scientific, Inc.) was used to extract total RNA from cells and tissues. The RNA purity was evaluated based on the A260/280 ratio. RNA was reverse transcribed into cDNA using miRNA first-strand cDNA synthesis kit [Accurate Biotechnology (Hunan) Co., Ltd.]. SYBR Green Premix Pro Taq HS qPCR Kit II [Accurate Biotechnology (Hunan) Co., Ltd.] was used for qPCR to detect the relative expression of the target gene. Thermal cycling conditions are as follows: Initial denaturation at 95°C for 30 sec; 40 cycles of 5 sec at 95°C; 1 min at 60°C and 72°C for 15 sec; with a final extension cycle at 72°C for 5 min. Finally, it step in the dissociation stage. The relative levels were calculated using the 2-ΔΔCq method. The endogenous control gene is GAPDH. The primer sequence is shown in Table 1.
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3

qPCR Expression Analysis Protocol

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The cDNA was synthesized for qPCR using the Evo M-MLV RT Kit with gDNA Clean (Accurate Biotechnology Co., Ltd., Changsha, China). A miRNA first-strand cDNA synthesis kit (Accurate Biotechnology Co., Ltd.) was subsequently used for miRNA reverse transcription. The qPCR was conducted using the 2× SYBR green qPCR Master Mix (Bimake, Houston, TX, USA) and a LightCycler 96 Real-Time System (Roche, Basel, Switzerland); GAPDH and U6 levels were used for normalization. Each experiment of qPCR was repeated three times, and relative expression was calculated using the 2−ΔΔCt method [14 (link)]. The primer sequences of all genes are shown in Tables S1 and S2.
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4

Validation of miRNA Expression by qRT-PCR

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Ten miRNAs were selected for qRT-PCR to verify the differential expression results of sequencing. For miRNA expression, a miRNA first-strand cDNA synthesis kit (Accurate Biology, Hunan, China) was used to perform real-time fluorescent quantitative PCR. U6 snRNA was used as an internal reference. All qRT-PCR reactions were performed in the ABI 7500 real-time PCR system (Applied Biosystems, California, USA), with three reactions/samples. The relative expression of miRNA was calculated using the 2−ΔΔCt method (Livak and Schmittgen, 2001 (link)).
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5

RNA Extraction and qRT-PCR Analysis of RUNX2 and ALP

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Total RNA extraction was carried out with Trizol (AG, 21101) following the manufacturer’s protocols. The Reverse Transcriptase M-MLV (AG, 11705) was then used to convert the extracted total RNA into cDNA. Primer sequences of RUNX2 were: forward: 5′ CTCACTACCACACCTACCTG 3′ and reverse: 5′ TCAATATGGTCGCCAAACAGATTC 3′. Primer sequences of ALP were: forward: 5′ CCACGTCTTCACATTTGGTG 3′ and reverse: 5′-AGACTGCGCCTGGTAGTTGT-3′. The miRNA first-strand cDNA synthesis kit (Accurate Biotechnology, Hunan) was performed to reverse-transcribe miRNA. The miR-181a-5p-specific forward primer was AACATTCAACGCTGTCGGTGAGT, and U6 served as a standardization control. Quantitative reverse transcriptase PCR was carried out, and the relative standard curve method was performed to assess the results of the PCR data analysis.
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6

Comprehensive RNA Sequencing Workflow

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TruSeq Stranded Total RNA with Ribo-Zero Gold (Illumina, United States); AgencourtAMPure XP (BECKMAN COULTER, United States); Agencourt RNAClean XP(BECKMAN COULTER, United States); QubitRNA Assay Kit (Life Technologies, United States); QubitdsDNA Assay Kit (Life Technologies, United States); Bioanalyzer 2100 RNA-6000 Nano Kit (Aglient, United States); Bioanalyzer 2100 DNA-1000 Kit (Agilent, United States); SuperScript II Reverse Transcriptase (Invitrogen, United States); miRNA first strand cDNA synthesis kit (Accurate Biology, China); TRIpure Reagent Total RNA Extraction Reagent (Bioteke Corporation, China); primer (Tsingke Biotechnology Co., China).
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7

Profiling miRNA and mRNA in Mir155 Transgenic Mice

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The femurs were collected from wild-type, Mir155-Tg, and Mir155-KO mice. And bones were ground with a high-speed low-temperature tissue homogenizer (Servicebio, China). As previously reported (Teng et al., 2022 (link)), the miRNAs were extracted from BMSCs and ground bone tissues with the MolPure Cell/Tissue miRNA Kit (Yeasen, China) as per the manufacturer’s instructions. The miRNA was further reversed by Tailing reaction using miRNA first strand cDNA synthesis kit (Accurate Biology, China). In brief, 3.75 μL miRNA, 5 μL 2×miRNA RT Reaction Solution, 1.25 μL miRNA RT Enzyme Mix were incubated at 37°C for 1 hr, 85°C for 5 min. The mRNAs from osteoclasts induced from Mir155-KO and wild-type mice were extracted with an RNA extraction kit (Accurate Biology, China) as per the manufacturer’s instruction. Total RNA (500 ng) was transcribed with reversed regents (Accurate Biology, China). RT-qPCR was performed using SYBR Green Premix Pro Taq HS qPCR Kit (Accurate Biology, China) on an AriaMx Real-time quantitative PCR machine (Agilent, USA). The PCR conditions were 95°C for 30 s, followed by 40 cycles at 95°C for 5 s and 60°C for 30 s. The fold change relative to the control group was measured by the 2-∆∆Ct method. The primers used were shown in Table 1.
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