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8 protocols using mil 1β

1

Cytokine and Inflammation Biomarkers Assessment

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BALF were collected from euthanized mice by intratracheal injection and aspiration of 1 ml PBS. Cytokines levels in tissue culture conditioned supernatants, BALF, or sera were measured by ELISA using the following kits: mIL-1β , mIL-6, mTNFα, mMCP (eBioscience), mIL-18 (MBL Nagoya, Japan), mCRP (Abcam), Bradykinin (Enzo), IgM (Southern Biotech). Collagen in BALF was measured using the hydroxyproline assay kit (Condrex Inc). Myeloperoxidase or elastase activity were measured in lung homogenates using the MPO fluorometric detection kit (Enzo) or as previously described [58] (link). In Figure 3B, MPO was measured in the BALF by ELISA (Hycult Biotech).
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2

BALF Cytokine Measurement in Mice

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BALF were collected from euthanized mice by intratracheal injection and aspiration of 1 ml PBS. Cytokine levels in BALF or serum were measured by ELISA using the following paired antibodies kits: mIL-1α, mIL-1β, mIFNγ (eBioscience), mIL-18 (MBL Nagoya, Japan).
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3

Profiling Inflammatory Signaling in Murine Macrophages

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1x106 BMDMs/well were plated in 6-well tissue culture-treated dishes 16 hrs before the experiment. Cells were treated with 10 ng/mL mIL-1β (eBioscience) for 2 hrs or with 10 ng/mL mTNFa (BioLegend) for 6hrs. For RNA stability experiments, BMDMs were stimulated with LPS (100 ng/mL) for 2 hrs, and then treated with Actinomycin D (Sigma, 5 μg/mL). Samples were lysed in Trizol Reagent (Invitrogen/ThermoFisher) and RNA was extracted using phenol/chloroform method. RNA was resuspended in RNAse-free water and cDNA synthesis was performed using High Capacity RNA to cDNA kit (ThermoFisher) as per manufacturer’s instructions. qPCR was run using Power Sybr Green Master Mix (ThermoFisher) on a QuantStudio Flex6000 (ThermoFisher). Primer sequences used are listed in S2 Table.
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4

Generation of Intestinal Monolayers from Colonoids

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Monolayers derived from colonoids (human or mice) were generated as previously described with modifications27 (link)–29 (link). First, the growth media was removed, then Matrigel domes were disrupted and colonoids were resuspended in TrypLE express (Gibco) and incubated at 37 °C with 5% CO2 for 2 × 5 min. The colonoids were then rapidly disrupted into single cell suspensions with gentle pipetting through a p1000 tip, and an equal volume of monolayer media (base media supplemented with 50% WRN, N2 (Invitrogen), B27 (Invitrogen), mEGF (Invitrogen) and Y-27632 (AbMole) was added. Cells were centrifuged, then resuspended in monolayer media and added dropwise to Geltrex (Gibco) coated coverslips in 24-well plates. Monolayers were incubated at 37 °C with 5% CO2 and media changed 24 h after seeding. 72 h after seeding, confluent monolayers were stimulated with monolayer media supplemented with FliC (100 ng/ml; InvivoGen) or mIL-1β (10 ng/mL; Invitrogen) with or without recombinant IL-37 (100 ng/ml; R&D systems) or a corresponding volume of base media for 30 min.
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5

Quantifying mIL-1β and mIL-23 by ELISA

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Concentrations of mIL‐1β (Invitrogen, 88‐7013‐22) and mIL‐23 (eBioscience, 88‐7230‐22) were measured by ELISA kit according to the manufacturer's recommendations.
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6

Bone Marrow-Derived Dendritic Cell Activation and T Cell Co-culture

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Bone marrow-derived DCs (BMDC) were generated by plating bone marrow cells freshly isolated from tibia and femur into 10 cm dishes and cultured with RPMI-1640 supplemented with 10% heat-inactivated FBS, 1% penicillin and streptomycin, mGM-CSF (10 ng/ml; eBioscience) and mIL-4 (10 ng/ml; eBioscience). On day 6, floating and loosely attached cells were collected representing the BMDCs. For co-culture with CD4+ T cells: BMDCs (2 × 104 cells/well) were seeded in 96-well round-bottomed plate and pulsed either with OVA alone (20 μg/ml) or OVA + c-di-GMP (25 μg/ml) for 18 h. After gentle washing, BMDC were cultured for 4 days with CD4 T cells (1 × 105 cells/well) purified (by magnetic selection; Miltenyi Biotec) from spleen of OT-II transgenic mice. Supernatants were analyzed by ELISA. For co-culture substitution experiment: PGE2 (Sigma-Aldrich) and the cytokines mIL-23, mIL-1α, and mIL-1β (Invitrogen) were added to BMDC culture alone or to the co-culture with CD4+T cells. Supernatant was analyzed by ELISA and BMDCs were separated from CD4+ T cells by FACS sorting and total RNA analyzed by qRT-PCR.
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7

Generation and Characterization of Gimap5 Knockout Mice

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All experiments were performed according to US National Institutes of Health guidelines and were approved by the IACUC of The Cincinnati Children’s Hospital. C57BL/6J mice were obtained from Jackson. Deletion of Gimap5 in Gimap5flox/floxCd4cre-ert2 mice was induced by the administration of tamoxifen chow (40mg/kg body weight; Harlan Laboratories Teklad Diets). Gimap5sph/sph mice were generated as previously described (6) and bred in-house in the vivarium of Cincinnati Children’s Hospital. All mice were maintained under specific pathogen-free conditions.
All antibodies used for flow cytometry were purchased from eBioscience or Biolegend unless otherwise noted. Purified α-mouse-CD3 (17A2) and α-mouse-CD28 (37.51) antibodies (Biolegend) were used for mouse T cell activation. A fixable viability stain was purchased from eBioscience. 7-AAD was purchased from BD. PMA, ionomycin, and Brefeldin A were obtained from Sigma. αIFNγ (XMG1.2) and mIL-23 were obtained from eBioscience. TGFβ1, mIL-4, and hIL-2 were purchased from Miltenyi Biotech. αIL-4, IL-6, and mIL-1β, mIL-12, and TGFβ3 were obtained from PeproTech.
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8

Cardiac γδT Cell Activation Assay

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Cardiac γδT cells were enriched from total cardiac cells using anti-PE Microbeads UltraPure (Miltenyi Biotec) after staining with PE-conjugated anti-mouse γδTCR (BD). Isolated cardiac γδT cells were transferred to 96-well Maxisorp plate (Nunc), which was coated overnight with 100 μl of 4-μg/ml anti-CD3 antibody (145-2C11; TONBO Biosciences) and cultured in the presence of 10-ng/ml mIL-1β (Peprotech) and 10-ng/ml mIL-23 (RD systems). After 48 h, the supernatants were collected and assayed for IL-17A production using LEGEND MAXTM ELISA Kit (BioLegend) according to the manufacturer’s instructions.
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