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5 protocols using supersignal west pico detection kit

1

Profiling Candida-Induced Epithelial Proteome

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Total proteins from Candida infected epithelial cells were isolated as previously described with modifications [31 (link)]. TR146 epithelial cells were infected with each Candida strain at MOI (1:10). The Candida cells were allowed to infect epithelial cells for 3 h. After infection, the epithelial cells were lysed using 400μl RIPA buffer (50 mM Tris-HCl, pH 7.4, 150 mM NaCl, 1 mM EDTA, 1% Triton X-100, 1% sodium deoxycholate, 0.1% SDS) containing complete protease inhibitor cocktail (Roche, Basel, CH) and phosphatase inhibitors, left on ice for 30 min, then centrifuged for 10 min at 21000 × g at 4°C. Total protein concentration was estimated using bicinchoninic acid (BCA) assay (Thermo Fisher Scientific) and stored at −80°C. For immunoblotting, total protein (30μg) was separated by 12% SDS-PAGE and transferred to nitrocellulose membrane. Membranes were blocked in 5% milk or Bovine Serum albumin (BSA) in TBS containing 0.1% Tween-20 (TBST) at 23°C for 1 h. Blots were incubated in primary antibody (Phospo-MKP1 [S359] and c-Fos rabbit monoclonal antibodies (Cell Signaling Technology, Danvers, MA) for 16 h at 4°C. Membranes were washed twice with TBST and probed with a secondary antibody for 1 h at 23°C. Secondary antibodies were detected using SuperSignal West Pico detection kit (Thermo Fisher Scientific).
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2

Western Blot Analysis of Recombinant hOAS1

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hOAS1 proteins expressed in bacteria or in mammalian cells were separated on a 10% SDS-PAGE gel and transferred to a nitrocellulose membrane at 100 V for 1 h. The membrane was incubated in blocking buffer (1 X Tris-buffered saline containing 5% non-fat dry milk and 0.1% Tween 20) at room temperature for 1 h and then cut into strips. To detect the hOAS1 isoform proteins expressed in bacteria, the membrane strips were incubated with anti-V5 (Sigma-Aldrich, St. Louis, MO, USA; 1:1000) antibody at 4 °C overnight. To detect overexpressed hOAS1 isoforms in HEK293 cell lysates, the membrane strips were incubated at 4 °C overnight with mouse anti-Flag antibody (Sigma-Aldrich, St. Louis, MO, USA; 1:1000) or mouse anti-β actin antibody (Cell signaling, Danvers, MA, USA; 1: 10,000). The membranes were washed three times for 10 min with 1 X Tris-buffered saline containing 0.1% Tween 20, and then incubated with a horseradish peroxidase-conjugated secondary antibody (Santa Cruz Biotechnology, Dallas, TX, USA) for 1 h at room temperature. After washing, the membrane strips were processed for enhanced chemiluminescence using a Super-Signal West Pico detection kit (Thermo Fisher Scientific, Waltham, MA, USA) according to the manufacturer’s protocol.
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3

Western Blot Quantification Protocol

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Immunoblotting was as described (12 (link)). Briefly, cells were seeded, treated as required and protein was harvested using RIPA buffer and a cocktail of protease/phosphates inhibitors (#A32963, Thermo Scientific). Protein was quantified using the BCA assay (#23227, Thermo Fisher Scientific) and 20-μg protein was resolved on appropriate SDS-polyacrylamide gels depending on the size of the protein of interest. Proteins were transferred onto Hybond-P (#GE10600023, Sigma) and probed using appropriate antibodies (see Supplementary Methods). Immunoreactivity was detected using the SuperSignal West Pico Detection Kit (#34577, Thermo Fisher Scientific). The level of protein signal was quantified using Image J.
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4

Protein Extraction and Western Blotting

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Total protein from the encapsulated cells was extracted by homogenizing cell-laden hydrogels using a pellet mixer and lysed with RIPA buffer containing halt protease inhibitor (10 μg/mL), 5 mM EDTA, and 20 μM of phenylmethylsulfonyl fluoride (PMSF). Protein extract was cleared by centrifugation at 8,000 rpm for 10 min at 4 °C and concentrated using a centrifugal filter unit (VWR) at 12,000 rpm for 20 min at 4 °C. Total protein concentration was determined by micro-BCA protein quantification kit (Pierce), separated by SDS-PAGE, and transferred to PVDF transfer membrane using a Trans-Blot Turbo Transfer System (BioRad). The blots were blocked overnight with 5% nonfat milk in TBS solution (PBS containing 0.05% Tween 20) at 4 °C, followed by incubation in primary antibody (rabbit anti-β-vimentin 1:400, rabbit anti-E-cadherin 1:400, or mouse anti-β-actin 1:450) and HRP-conjugated secondary antibody (Anti-rabbit IgG, Anti-mouse IgG, 1:800) for 1 h each at room temperature. The blots were washed with TBS solution for 1 h and treated with a chemiluminescence detection kit (SuperSignal West Pico Detection Kit, Thermo Scientific). Immunoblotting images were obtained using a chemiluminescence imaging system (LAS3000, Fuji Film).
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5

Uncovering Thermogenic Adaptations

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Mice were shifted from 24 C to 5 C during 48 h. Inguinal adipose tissues was collected and homogenized in RIPA buffer containing protease inhibitor cocktail (Sigma-Aldrich). Protein concentrations were measured using the Pierce BCA Protein Assay kit (Thermo Fisher) according to the manufacturer's instructions. Denatured protein lysates were loaded onto SDS-PAGE gels and transferred to nitrocellulose (NC) membranes. Antibodies to UCP1 (Cell Signaling Technology, E9Z2V), actin (Cell Signaling Technology, 8457) were used. Signals were detected using the SuperSignal West Pico Detection Kit (Thermo Fisher), and images were acquired and quantified with a Licor Odyssey FC imaging system.
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