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5 protocols using ab5644

1

Western Blot Analysis of PC9 Cell Lines

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Stably transfected PC9 cells and PC9/GR cells were seeded in 6-well plates at 3 × 105 cells/well and cultured for 48 h. The cells were lysed in RIPA buffer containing 1% PMSF. A BCA protein kit (PC0020; Beijing Solabo) was used to determine the protein concentration. The protein extracts were separated by 10% SDS-PAGE, transferred onto PVDF membranes (ISEQ00010; Millipore, USA) and then probed with specific antibodies against FGL1 (ab197357; Abcam, USA), EGFR (26,462,646; Cell Signaling Technology, USA), p-EGFR Y1173 (ab5644; Abcam), p-EGFR Y1068 (ab5644; Abcam), PARP1 (ab4830; Abcam), caspase 3 (ab13847; Abcam), and β-actin (60008–1-Ig; Proteintech, Wuhan, China). After incubation with HRP-coupled secondary antibody, the protein bands were detected in an ECL Advance Detection System (Amersham Biosciences, USA) using a SuperSignal West Femto Tril Kit (34,094; Thermo USA). The gray-scale value of all bands was analyzed using the ImageJ software.
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2

Western Blot Protein Detection Protocol

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Protein expression was detected by western blotting, as previously described64 (link). Briefly, for cell lysis, RIPA buffer containing protease and phosphatase inhibitors was used. Proteins were separated by SDS–polyacrylamide gel electrophoresis electrophoresis, transferred to a PVDF membrane and detected with the cognate antibody. The following antibodies were used: anti-Pan Actin (1:10,000; Neomarkers, Fremont, CA); anti-total EGFR (1:1,000; sc-03, Santa Cruz, Dallas, TX); anti-pEGFR (1:1,000; ab5644, Abcam, Cambridge, MA); anti-HA tag (12CA5) (11 583 816 001, Roche, Germany). The anti-Rab7A (1:6,000; #R8779), anti-FLAG tag (1:10,000; #F1804) and anti-Tubulin (1:5,000; #T9026) antibodies were from Sigma-Aldrich (St Louis, MO). The anti-FLCN antibody (1:3,000; #3697), anti-pERK (1:2,000; #4370 and 1:2,000; #9101), anti-pS6 (1:2,000; #5364), anti-HA (1:2,000; #3724), anti-pMET (1:1,000; #3129), total MET (1:1,000; #3148) and IgG control (#3900) antibodies were from Cell Signaling Technology (Danvers, MA). Western blots were developed using the Bio-Rad ChemiDoc system and densitometry was analysed with BioRad Image Lab Software (Bio-Rad Laboratories, Hercules, CA). Uncropped scans of the most important blots are contained in Supplementary Fig. 6.
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3

Quantitative Western Blot Analysis

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Western blot analysis was performed on protein extracts of tissues and cells. The proteins were first resolved by 5% and 10% SDS-PAGE and electrotransferred onto PVDF membranes (Millipore, USA). After blocking, the membranes were incubated with primary antibodies overnight at 4 °C. The following primary antibodies were used: anti-EGFR antibody (1:1,200, rabbit monoclonal antibody, AB52894, Abcam, UK), anti-EGFR (phosphor Y1068) antibody (1:800, rabbit polyclonal antibody, AB5644, Abcam, UK), anti-ERK1+ERK2 antibody (1:1000, rabbit polyclonal antibody, AB17942, Abcam, UK), anti-phosphor-Erk1/2 (Thr202/Tyr204) antibody (1:600, rabbit monoclonal, 4370S, Cell Signaling Technology, Inc., USA), and anti-β-actin antibody (1:1000, rabbit polyclonal antibody, AB8227, Abcam, UK). Then, the membranes were incubated with a secondary antibody (1:3000, goat anti-rabbit Ig G, AB205718, Abcam, UK) at room temperature for 1 h before being incubated with an electrochemiluminescence reagent for 30 s to 2 min and exposed to Kodak film. The data are presented as the relative optical density (ROD, relative to β-actin) and were determined using ImageJ software.
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4

Western Blot Analysis of Protein Expression

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Cells lysis was performed with total protein extraction buffer (NCM Biotech, Suzhou, China), and tissues were homogenized in T-PER tissue protein extraction reagent (Thermo Fisher Scientific), to which a combination of protease and phosphatase inhibitors was added (NCM Biotech, Suzhou, China). The protein concentration was measured by a BCA Protein Assay Kit (Thermo Fisher Scientific). Cell or tissue lysates (approximately 20 μg of protein) were subjected to SDS-PAGE (8–10%) and transferred to nitrocellulose (NC) membranes. After blocking with 5% fat-free milk, the NC membranes were incubated with different primary antibodies at 4 °C overnight. Antibodies against the following proteins were used: GPAA1 (1:1000, Bioss, bs-13496R), caveolin-1 (1:1000, Abcam, ab2910), AP2B1 (1:1000, Proteintech, 15,690–1-AP), β-actin (1:10000, Abcam, ab5644), EGFR (1:1000, Abcam, ab52894), p-EGFR (Y1068) (1:1000, Abcam, ab40815); ERBB2 (1:1000, Abcam, ab16901); p-ERBB2 (Y877) (1:1000, Abcam, ab47262), p-AKT (S473) (1:1000, CST, #4060), and AKT (1:1000, CST, #4685). After three washes in TBST (pH 7.4), membranes were incubated with species-specific secondary antibodies (Thermo Fisher Scientific) at room temperature for 1 h. Ultimately, protein bands were visualized by an Odyssey imaging system (LI-COR Biosciences, Lincoln, NE, USA).
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5

Protein Extraction and Western Blot Analysis

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Total cellular protein was isolated with RIPA buffer (Beyotime Institute of Biotechnology), and a BCA assay kit (Beyotime Institute of Biotechnology) was then utilized to quantify protein levels in each sample. Equivalent protein amounts were separated by SDS-PAGE and transferred to PVDF membranes (Millipore). These blots were then blocked for 2 h with 5% non-fat milk, followed by 4 °C incubation overnight with appropriate primary antibodies. After being washed, blots were then incubated with an HRP-conjugated antibody (1:5,000; ab205718; Abcam), after which protein levels were visualized using an Immobilon Western Chemiluminescent HRP Substrate kit (Millipore). Primary antibodies were: rabbit polyclonal anti-EGFR (1:1000, ab5644, Abcam), anti-PTEN (1:1000, ab32199, Abcam), anti-Akt (#9272, Cell Signaling Technology, USA), anti-phospho (Ser473)-Akt (1:2000, #4060, Cell Signaling Technology), anti-MMP7 (1:1000, ab5706, Abcam), anti-MMP9 (1:1000, ab38898, Abcam), anti-E-Cadherin (1:1000, ab1416, Abcam), anti-N-Cadherin (1:1000, ab18203, Abcam), anti-Vimentin (1:1000, ab92547, Abcam).
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