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3 protocols using ab186695

1

IFITM and ASFV Protein Detection by Western Blot

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Cells were lysed by radio immunoprecipitation assay lysis buffer (EpiZyme PC101) followed by centrifuging at 13 000 × g for 15 min at 4°C. Total protein was collected and stored at −80°C until use. The protein samples were used for sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) and transferred to a nitrocellulose membrane that was blocked for 15 min with QuickBlock Blocking Buffer for Western Blot (Beyotime, Shanghai, China). They were then incubated overnight at 4°C with primary antibodies including: rabbit polyclonal antibody to IFITM1, IFITM2, IFITM3 (Proteintech; 11727-3-AP, 12769-1-AP, 11714-1-AP), IFITM5 (Abcam; ab230863) and β-actin (CST; 4970S), anti-ASFV p30 mouse monoclonal antibody (provided by our laboratory) and anti-ASFV p72 mouse monoclonal antibody (Zoonogen M100068), followed by a 1 h incubation with secondary antibodies: Alexa Fluor 790 conjugated goat anti-mouse polyclonal antibody (Abcam; ab186695) and Alexa Fluor 680 conjugated goat anti-rabbit polyclonal antibody (Abcam: ab186696). Protein bands were visualized by Odyssey Sa (LI-COR, Lincoln, NE, USA). WB quantification by densitometry for each viral proteins or SwIFITM proteins and beta-actin are expressed using the ImageJ package.
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2

Metabolomic Analysis Protocols and Reagents

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Methanol (MeOH), water, formic acid (Optima LC/MS grade) and glutamine were purchased from Thermo-Fisher Scientific (Illkirch, France). Isotope metabolite standards including 17α-Hydroxyprogesterone-d8 (2,2,4,6,6,21,21,21-d8), L-Thyroxine-13C6, Succinic acid-2,2,3,3-d4, Pyruvic acid-1-13C and DL-Alanine-15N with >98% purity were acquired from Sigma Aldrich (St. Quentin Fallavier, France) as well as oligomycin, carbonyl cyanide 4‐(trifluoromethoxy) phenylhydrazone (FCCP), antimycin A and aspartate. All antibodies (ab42364, EP1332Y, ab186695 and ab186696), the NAD/NADH and ATP Assay Kit (ab65348 and ab83355) were obtained from Abcam (Paris, France) and the Mitotracker® green from Molecular Probes (Oregon, USA). Tris-Glycine Gel was purchased from Life Technologies (Illkirch, France) and DMEM-F12 from Jacques Boy Institute of Biotechnology (Reims, France). The DMEM medium supplemented with FBS (fetal bovine serum) was acquired from PAN-biotech (Wimborne, UK) and the Seahorse XFe Base Medium from Agilent Technologies (Santa Clara, CA, USA).
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3

Quantifying Yeast Protein Expression

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Yeast strains were grown in standard synthetic dextrose (SD) medium (6.7 g/L yeast nitrogen base with ammonium sulfate, 2% galactose) from OD600 of~0.1 overnight at 30°c. Next, the cultures were back diluted to OD600 of~0.1 and let to grow until OD600 of~0.5. The media fraction was separated from the cells using centrifugation (3000g for 3min) and cells were washed with DDW. Both media and cell fractions were precipitated using 10% Trichloroacetic acid (TCA) (Sigma) for 20min on ice, centrifuged for 15min at 14000g at 4°c, the supernatant was aspirated, pellet was washed in cold acetone, dried at room temperature for 30min and resuspended in urea lysis buffer (8M urea in 50mM tris pH 7.5 and oComplete Protease Inhibitor (Roche)). The cells were beaten with 100μl of glass beads (scientific industries) for 10min at 4°c. Then 0.1% SDS and 50mM DTT were added to both the cells and the media fractions and boiled at 95°c for 5min. Glass beads and cell debris were removed and the samples were resolved on 4-20% precast polyacrylamide gel (Bio-Rad), transferred to nitrocellulose membrane (PALL), and probed with a monoclonal mouse α-cherry (ab125096, Abcam) and a polyclonal rabbit α-GFP (ab290, Abcam). Secondary antibodies were alexa680 α-rabbit (ab175773, Abcam) and alexa790 α-mouse (ab186695, Abcam) that enable scanning using an Odyssey imaging system (LI-COR Biosciences).
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