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8 protocols using fastbreak cell lysis reagent

1

Recombinant Production and Purification of CRP Proteins

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CRP1 and CRP4 cDNAs were amplified by PCR and inserted into the prokaryotic pET19b-10×His-SUMO expression vector. CRP cDNAs were inserted in-frame into the expression vector, allowing for creation of N-terminal 10×His-SUMO tags on the CRPs. The pET19b-10×His-SUMO-CRP1 and pET19b-10×His-SUMO-CRP4 expression vectors were transformed into BL21(DE3)pLysS competent cells (Promega, Madison, WI, USA). Transformants were grown overnight and then used for protein inductions. After 4 h of induction at 37 °C, cells were pelleted and lysed in 1× FastBreak cell lysis reagent according to the manufacturer’s instructions (Promega, Madison, WI, USA). Extracts were sonicated 2 min to ensure complete bacterial cell lysis (10 sec pulses). Following sonication, crude extracts were clarified by centrifugation at 16,000× g for 10 min at 4 °C. Supernatants were filtered through a 0.2 micron filter and then used for affinity chromatography purification.
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2

Affinity Purification of Histidine-Tagged Proteins

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Cell pellets were re-suspended in 90 μl of buffer prepared by adding one cOmplete EDTA-free Protease Inhibitor tablet (Roche) to 50 ml of 50 mM Tris pH 8, 0.5 M NaCl, 5 mM imidazole. An aliquot (60 μl) of 1× FastBreak Cell Lysis Reagent (Promega) was added and the lysate was incubated at 37°C for 15 min and at 70°C for 15 min, before centrifugation through a Millipore 96-well filter plate. Clarified lysates were combined with 60 μl Ni-NTA agarose (Qiagen) and incubated with shaking at room temperature for 2 h. After collecting the agarose resins using a fresh filter plate, resins were washed two times with 200 μl wash buffer (50 mM Tris pH8, 0.5 M NaCl, 20 mM imidazole) and eluted with 80 μl of 50 mM Tris pH8, 0.5 M NaCl, 200 mM imidazole.
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3

Purification of Cas9 and Acr Proteins

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Competent BL21 (DE3) E. coli cells (Novagen, 69450)
Amicon Ultra-15, 10 KDa MWCO, Centrifugal Filter Unit (Sigma-Aldrich, UFC901008)
10x FastBreak Cell Lysis Reagent (Promega, V8571)
Econo-Pac Chromatography Columns (Biorad, 7321010)
Cas9 lysis buffer: 1xPBS pH 7.5, 350 mM NaCl, 0.5 mM TCEP, 1x FastBreak Cell Lysis Reagent
Cas9 heparin column wash buffer: 1xPBS pH 7.5, 350 mM NaCl, 0.5 mM DTT
Cas9 Sephacryl S-200 buffer: 1xPBS pH7.5, 350 mM NaCl, 0.5 mM DTT
Acr Lysis buffer: 20 mM HEPES pH 7.5, 300 mM NaCl, 20 mM imidazole, 0.5 mM TCEP and 1x FastBreak Cell Lysis Reagent
Ni-NTA Agarose (Qiagen, 30210)
Acr Ni column wash buffer: 20 mM HEPES pH 7.5, 300 mM NaCl, 20 mM imidazole, 0.5 mM DTT
Acr Ni column elution buffer: 20 mM HEPES pH 7.5, 300 mM NaCl, 500 mM imidazole, 0.5 mM DTT
Acr dialysis buffer: 20 mM HEPES pH 7.5, 300 mM NaCl, 0.5 mM DTT
TEV protease (Sigma-Aldrich, T4455)
Bio-Safe Coomassie Stain (Biorad, 1610786)
Dithiothreitol [DTT] (Fisher Scientific, BP17225)
HEPES (Sigma-Aldrich, H4034)
Bond-Breaker TCEP Solution, Neutral pH (Thermo Fisher Scientific, 77720)
Imidazole (Sigma-Aldrich, I202)
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4

Automated High-Throughput Protein Expression

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Variant sequences were appended an N-terminal His6 and HRV3C tagged on their N-termini, codon optimized (VectorBuilder), cloned into a pET vector (VectorBuilder), transformed into BL21(DE3) and shipped from VectorBuilder as a glycerol stock in 96-well block. Variants were inoculated into 1 mL of ZYM-5052 autoinduction media87 (link) supplemented with 100 μg/mL carbenicillin in a 96-well deep block, covered with a gas-permeable seal and allowed to grow and expressed by shaking at 37°C overnight (16 hours). High density expressed cultures were lysed by addition of detergent (Promega Fast Break Cell Lysis Reagent) supplemented with lysis buffer (30 mM HEPES pH 7.6, 150 mM NaCl, 0.5 mM TCEP, cOmplete mini EDTA free protease inhibitor cocktail (Roche), benzonase nuclease) with incubation under gentle shaking for at least 15 mins at room temperature before whole expression SDS-PAGE gel samples were taken. Individual wells from 96-well block were transferred to microcentrifuge tubes, centrifuged at 21,000 rcf for 5 mins at room temperature, and the soluble fraction was transferred to a new 96-well block for soluble protein SDS-PAGE sample collection.
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5

Measuring Wnt Signaling Activity in Hone1 Cells

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TOP flash and TCF4 were designed and synthesized by Sangon Biotech Co., Ltd.
Hone1 cells were cultured in 96 well plates (20 000 cells/50 μL) and transfected
with 20 ng of TOP flash. Following that, cells were transfected with
Lipofectamine™ 2000 (Invitrogen, Carlsbad, CA) as the manufacturer’s protocol.
The cells were lysed using FastBreak™ Cell Lysis Reagent (Promega Corporation,
Madison, WI, USA) and the luciferase activities were assayed by Dual-Luciferase
Reporter assay system (Promega Corporation).
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6

Recombinant DDX1 and DDX3 Protein Purification

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Recombinant DDX1 and DDX3 proteins were purchased from OriGene. The recombinant Nullbasic-FLAG-V5-6xHis was produced in E. coli strain BL21-AI (Invitrogen) transformed by pDEST42-Nullbasic-FLAG. A 200 ml culture was grown in Luria broth to log phase and induced with 0.2% arabinose and 1 mM IPTG. After 4 hours the E. coli was collected by centrifugation and immediately processed. 1× FastBreak™ Cell Lysis Reagent (Promega) was added to the cell pellet for 15 min and the lysate was mixed with 2 ml of Chelating Sepharose beads (GE Healthsciences) for 1 min. The beads were placed into a column and wash buffer (100 mM HEPES pH7.5, 10 mM imidazole) was applied 6 times. Two ml of elution buffer (100 mM HEPES pH7.5, 500 mM imidazole) was added and after 1 min was collected. The eluted protein was dialysed twice for 90 minutes each in 1 liter of storage buffer (20% glycerol v/v, 50 mM Tris–HCl pH8.0, 1 mM ZnCl2, adding fresh 2 mM 1,4-Dithioerythritol every 30 minutes). The protein was stored in aliquots under liquid nitrogen.
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7

Purification of GST-GFP-P4M Fusion Protein

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BL21-competent cells were transformed with GST-GFP-P4M. A single transformed colony was inoculated in 100 ml of Terrific Broth (Invitrogen) supplemented with 0.1% glycerol and incubated overnight at 37°C. The next day, 20 ml of the overnight culture was inoculated into 400 ml of Terrific Broth with glycerol and incubated for 2 h at 37°C. After the incubation, isopropyl β-d-1-thiogalactopyranoside (Sigma-Aldrich) was added (final concentration 0.25 mM), and the culture was incubated at 30°C for 4 h. After the incubation, cells were lysed using FastBreak cell lysis reagent (Promega) according to the manufacturer’s instructions. The cell lysate was then centrifuged and the supernatant collected. The presence of GST-GFP-P4M was confirmed by Western blot using an α-GFP antibody (GFP(B-2); sc-9996; Santa Cruz Biotechnology, Dallas, TX). The supernatant was then incubated with Glutathione Sepharose 4B (GE Healthcare; previously washed three times with binding buffer, phosphate-buffered saline [PBS], pH 7.3) overnight at 4°C. The solution was then centrifuged and washed three times with binding buffer. Finally, the pellet was incubated in elution buffer (50 mM Tris-HCl plus 10 mM reduced glutathione, pH 8.0) for 30 min at room temperature, and the elution was collected. The presence of the purified GST-GFP-P4M was confirmed by immunoblotting with anti-GFP antibody (GFP(B-2).
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8

Purification and Analysis of Mouse IFN-α

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Recombinant proteins of mouse sortilin and cytokines except for mouse IFN-α were purchased from R&D. GST-fused mouse IFN-α was purified as follows: the plasmid pGEX-IFNA2 was introduced into Escherichia coli strain Rosetta 2(DE3) (Novagen, Madison, WI). Plasmid-bearing cells were initially grown aerobically at 37 °C on L medium46 containing 100 μg/ml ampicillin. Expression of recombinant proteins was then induced by the addition of 0.2 mM IPTG at 20 °C for 18 h. Cell lysates were prepared with FastBreak Cell Lysis Reagent (Promega, Madison, WI). Isolated supernatants were purified with a GSTrap 4B column (GE Lifesciences). Eluted protein fractions were then desalted through a HiTrap Desalting column (GE Lifesciences) and fractions containing purified proteins were concentrated with Vivaspin 20 spin columns (GE Lifesciences). Concentrated proteins were stored at −80 °C until use. Surface plasmon resonance analysis was performed as described47 (link) on a Biacore X instrument (GE Lifesciences). Kinetic parameters were determined using BIAevaluation software.
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