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Absolute qpcr sybr green low rox mix

Manufactured by Thermo Fisher Scientific
Sourced in United States

The Absolute qPCR SYBR Green Low ROX Mix is a ready-to-use solution for quantitative real-time PCR (qPCR) assays using the SYBR Green detection method. It contains all the necessary components, including a DNA polymerase, SYBR Green I dye, buffers, and additives, optimized for reliable and sensitive gene expression analysis.

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5 protocols using absolute qpcr sybr green low rox mix

1

Quantitative RT-PCR Gene Expression Analysis

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Gene expression analysis (qRT-PCR) qPCR was performed by Syd Labs (Natick, MA, USA). Total RNA was isolated from cells using the RNAeasy Minikit (QIAGEN), and reverse transcribed using the First Strand cDNA Synthesis Kit (Syd Labs). qPCR reactions were performed with the following gene-specific primers (generated by Integrated DNA Technologies):
cDNA (100 ng, calculated from initial RNA) samples were pre-amplified for 12 cycles using ABsolute qPCR SYBR Green Low ROX Mix (ThermoFisher). qPCR reactions were performed using an Agilent MX3000 (Fluidigm) with 40 cycles of amplification (15 s at 95°C, 5 s at 70°C, and 60 s at 60°C). Ct values were calculated by the Real-Time PCR Analysis Software (Fluidigm). Relative gene expression was determined by the ΔCt method. Hprt was selected as the reference gene.
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2

Quantitative Analysis of Nampt mRNA Expression

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Total RNA of liver tissue was extracted by TRIzol ® Reagent (Life Technologies) according to manufacturer's protocol. 1 mg of total RNA was transcribed into cDNA by M-MLV Reverse Transcriptase (#28025013, Invitrogen). Quantitative PCR analyses were per-formed using the qPCR Master Mix Plus Low ROX (Eurogentec) or Absolute qPCR SYBR Green Low ROX Mix (Thermo Scientific) and the Applied Biosystems 7500 Real Time PCR System. Nampt mRNA expression (forward: 5 0 -GAT GGT CTG GAA TAC AAG TTA CAT GAC T-3'; reverse: 5 0 -ATG AGC AGA TGC CCC TAT GC-3 0 , probe: 5 0 -AGG AGT CTC TTC GCA AGA GAC TGC T-3 0 ) was normalized to Cyclo-phillin (forward: 5 0 -ATG TGG TTT TCG GCA AAG TT-3'; reverse: 5 0 -TGA CAT CCT TCA GTG GCT TG-3 0 )
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3

Quantitative PCR Analysis of Liver RNA

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Total RNA of liver tissue was extracted by TRIzol ® Reagent (Life Technologies) according to manufacturer's protocol. One micro-gram of total RNA was transcribed into cDNA by M-MLV Reverse Transcriptase (Invitrogen). Quantitative PCR analyses were performed using the qPCR Master Mix Plus Low ROX (Eurogentec) or Absolute qPCR SYBR Green Low ROX Mix (Thermo Scientific) and the Applied Biosystems 7500 Real Time PCR System. Primer se-quences are summarized in Supplementary Table S2.
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4

Quantitative Real-Time RT-PCR from Total RNA

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Total RNA from 4 × 106 cells was isolated using the High Pure RNA isolation Kit (Roche, Mannheim, Germany), cDNA was synthesized from equal amounts of RNA using the first strand cDNA kit from Thermo Scientific (Waltham, MA USA). Quantitative real–time RT-PCR was performed using ABsoluteTM QPCR SYBR®Green Low ROX Mix (Thermo Scientific, Waltham, MA, USA). Relative expression was calculated by normalization to β–Actin mRNA expression levels as 2-ΔCt. All primers were synthesized by Eurofins MWG Operon (Ebersberg, Germany) (Table 1).
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5

Quantitative Analysis of Immune-related Transcripts

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4 × 106 cells were harvested and subsequently total RNA was isolated using the High Pure RNA Isolation Kit (Roche, Mannheim, Germany). The first strand cDNA kit by Thermo Scientific (Waltham, MA, USA) was used for the synthesis of cDNA from equal amounts of RNA. ABsoluteTM qPCR SYBR®Green Low ROX Mix (Thermo Scientific, Waltham, MA, USA) was used to perform quantitative real-time PCR. For the calculation of relative expression, normalization to β-Actin mRNA expression levels as 2-ΔCt was done. All primers were synthesized by Eurofins MWG Operon (Ebersberg, Germany). Human β-Actin, sense, 5′-aga gct acg agc tgc ctg ac-3′, antisense, 5′-agc act gtg ttg gcg tac ag-3′, human IDO, sense, 5′-tta gag tca aat ccc tca gtc c-3′, antisense, 5′-ttt gca gat ggt agc tcc tc-3′, human ADA, sense, 5′-gac ctg gct gga gat gag ac-3′, antisense, 5′-gtc ttc cag ggt gtg gta gc-3′, human ENTPD1 (CD39), sense, 5′-agt tct gtg ctc agc ctt gg-3′, antisense, 5′-ttg cag aag gag gga gag aa-3′, human NT5E (CD73), sense, 5′-ggg agg aca ctc caa cac at-3′, antisense, 5′-agg cct gga cta cag gaa cc-3′, human S100A8, sense, 5′-atg ccg tct aca ggg atg ac-3′, antisense, 5′-acg ccc atc ttt atc acc ag-3′, S100A9 sense, 5′-tca tca aca cct tcc acc aa-3′, antisense, 5′-gtg tcc agg tcc tcc atg at-3′.
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