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88 protocols using sas 9

1

Echocardiographic Parameters and Image Quality

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Continuous variables were described in mean values ± standard deviation (SD) and categorical variables in proportions. The distribution of the echocardiographic parameters was shown according to image quality. An additional analysis was performed if the variability in values was considered clinically meaningful. In this case, linear regression models were performed having the echocardiographic parameter as the dependent variable and image quality categories as the independent variable; adjusting for age, ethnicity, sex, body-mass index (BMI), and height as covariates.
Reproducibility was assessed computing intra-class correlation coefficient (ICC) and residual coefficient of variation (technical error) based on a linear mixed model. Bland-Altman plots and ICC compared STE measurements at the Field Center and at the Echo RC. The statistical analysis was performed using SAS 9.0 and STATA 11.0.
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2

Xenodiagnosis for Visceral Leishmaniasis

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The major outcome was positive results by xenodiagnosis, defined as the detection of L. donovani promastigotes or DNA in at least 1 fly or pool of flies fed on that patient or their blood. Data were analyzed using SAS 9.0 and Stata 14.2. Univariate analyses utilized nonparametric tests as appropriate. Stepwise backward elimination procedures were used to construct multivariable logistic regression models with P = .05 for removal and addition. A receiver-operating-characteristic (ROC) curve was constructed to identify the skin parasite load threshold, with maximum sensitivity and specificity to differentiate PKDL patients positive and negative by xenodiagnosis (by maximizing Youden’s index, ie the sum of the sensitivity and specificity). Bias-corrected 95% confidence intervals (CIs) were computed for sensitivity and specificity and area under the ROC curve (AUC) by bootstrapping with 10000 replicates.
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3

Flaxseed Supplementation Impacts on CF

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Pairwise comparisons tested for differences from pre-FS supplementation. Paired t-tests (at defined α < 0.05), comparing plasma lignans, oxidative stress biomarkers, plasma cytokines, and buccal epithelium antioxidant mRNA levels were performed for both healthy volunteers and all CF patients evaluating FS-induced changes from baseline within each respective cohort. Upon evaluating individual CF patient levels of plasma lignans, we separated all CF patients (n = 10) into cohorts with low plasma lignans (n = 6) and high plasma lignans (n = 4). This decision was made, post-hoc, as some patients had undetectable levels, while others had levels similar to healthy controls. Pairwise comparisons were then performed on these groups. Paired t-tests or their non-parametric equivalents, Fisher’s exact test and box plots were generated using SAS 9.3 and Stata data analysis and statistical software (release 12, Stata Corp, College Station, TX). No corrections were made for multiple comparisons, as only a few planned comparisons within separate cohorts were made. Additionally this was a small pilot study – hypothesis-generating for future work and such corrections would not change the conclusion of the study.
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4

Hospital Compliance Rating and Factors

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We examined the overall compliance rating of all 3558 hospitals in the sample and created a map using the average compliance rating of hospitals in each HRR. We identified HRRs in which all hospitals were compliant or no hospital was compliant, respectively, and ranked states based on the average compliance rating of their hospitals. Using a linear probability model, we conducted hospital-level multivariate regression analysis to estimate the effect of various factors on hospitals’ compliance rating. We presented four model specifications—with or without state fixed effects (control for state-level heterogeneity), HRR fixed effects (control for HRR-level heterogeneity), and the peer compliance—to understand these factors’ incremental predictive power in the model. For sensitivity analysis, we estimated a probit model using the same set of variables.
We conducted HRR-level multivariate regression analysis to understand the variation in the average compliance rating across HRRs. For each HRR, we calculated the average values of the aforementioned variables, the number of hospitals in the market, the size of the market (total discharges), and market competitiveness (the discharge-based Herfindahl-Hirschman Index (HHI) adjusted for system affiliation).16 (link) We analyzed the data and created figures using SAS 9.3 and STATA 16.
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5

ART Adherence Determinants Analysis

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Analysis was performed using SAS 9.3 and STATA 11.2. The analysis plan, prepared before the database was locked, included predetermined cut-offs for outcome and predictor variables with a primary focus on perfect (100%) versus incomplete adherence. These predetermined cutoffs were used to summarize the prevalence of adherence across the different measures.
To identify individual modifiable risk factors and programme characteristics associated with incomplete ART adherence, a multiple mixed effects logistic regression model was used for the adherence measure that correlated best with the HIV RNA measurement. The model contained fixed effects for all factors of interest and a random intercept term effect for the mean adherence at each site. Cut-offs for the adherence measures were selected on the basis of receiver operating characteristic (ROC) analysis with HIV RNA at least 1000 copies/ml as the reference standard. The model was constructed using a hierarchical stepwise procedure, with individual-level factors associated at the 0.10 level added first, followed by the programme characteristics significant at the 0.20 level. The model was simplified using step-wise deletion retaining only significant factors and interactions at 0.05. The estimates were corrected for predictor data missing using multiple imputations (see supplemental Table 1, http://links.lww.com/QAD/A616) [36 ].
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6

Statistical Analysis of De-Identified Data

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Statistical analyses were performed using SAS 9.3 and Stata 14.2. Statistical significance was defined as P-value <0.05. This study was considered to be non-human subjects research due to the de-identified nature of the data. The study was approved by the Human Research Protection Office at Washington University in St Louis. All analysis was performed in compliance with the MCBS data use agreement.
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7

Evaluating Home Safety Intervention Effectiveness

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The home safety observation was conducted for 97%, 65% and 77% of participants at baseline, 6-month and 12-month follow-ups, respectively (Wang et al., 2018 (link)). There were no significant differences on baseline socio-demographic characteristics or home safety score by loss to follow-up, with the exception that lost dyads had marginally lower high school diploma/equivalent completion (40.2% vs 54.7%, p=0.055). Therefore, maternal education was included as a covariate. Under Missing at Random assumption (MAR), Maximum Likelihood Estimation (MLE) accounted for missingness in the continuous outcome variables to provide unbiased parameter estimates (Allison, 2012 ). SAS 9.3 and STATA 14.0 were used, with p<0.05 indicating significance and 0.05<=p<0.10 indicating marginal significance (Pritschet, Powell, & Horne, 2016 (link)).
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8

Hospice Exposure Effect on Veteran Outcomes

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We used logistic regression analysis to compare treatment in a VAMC-year classified in the lowest hospice exposure quin-tile (HEQ) with treatment in the next 4 quintiles, for the odds of experiencing each outcome. We used the same approach to estimate the association of hospice exposure with the odds of veterans’ surviving 180 days after diagnosis. All models were adjusted for all covariates, year of diagnosis, and facility fixed effects.
Our cost analyses regressed total daily costs on VAMC-level exposure, while controlling for the same covariates. We compared generalized linear models, ordinary least squares, and semi-log regression models on model fit using Hosmer and Lemeshow deciles.21 (link) A modified Park test was used to guide our selection of distribution and link functions in the generalized linear models.22 (link),23 (link) We corrected the standard errors for repeated sampling within person. Since costs in the first week post diagnosis were highly heterogeneous, we analyzed costs in days 8 through 180, and in these analyses, ordinary least squares provided the best fitting model. Statistical analyses were performed using SAS 9.3 and Stata statistical software.
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9

Weighted Analysis of Belgian Population

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Whatever the method of data collection (accelerometers or self-reported questionnaires), all the means and proportions computed were weighted for age, gender and season (using the Belgian population of January 2014 as reference) to provide outputs which are representative of the Belgian population. Outcomes were compared according to the gender, age, family education level, BMI, region and season, after adjustment for age and/or gender. When comparing the results between BMI classes, adjustment for family education level was also taken into account. Statistical analyses were performed using SAS 9.3 and Stata 14. A statistical significance level of 0.05 was used in all analyses.
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10

Trends in Branded and Biosimilar TNF Inhibitors

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We assessed patients’ demographic characteristics and described trends in the use of the branded or biosimilar infliximab, adalimumab and etanercept. A segmented linear regression model was used to examine utilization patterns of infliximab (the branded and biosimilar) and other TNF inhibitors (adalimumab and etanercept) before and after the introduction of the biosimilar infliximab. This model included the number of claims each month as the outcome variable, intercept and two slope terms that described the trend in use of TNF inhibitors per month before and after introduction of the biosimilar infliximab in November 2012. We did not include a term for a step change on introduction of the biosimilar infliximab, as we did not expect an immediate impact of the product. Newey-West standard errors were used to allow for autocorrelation up to the second order.(8 ) All analyses were performed using SAS 9.3 and STATA 13.
The study protocol was approved by the Institutional Review Boards of the Brigham and Women’s Hospital and Seoul National University Hospital. Patient informed consent was not required, as the dataset was de-identified.
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