The largest database of trusted experimental protocols

6 protocols using p fak

1

FAK Activation Assay in PC3 Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Semi-confluent PC3 cells were rinsed twice with PBS and separated into single cells by treatment with trypsin/EDTA solution (HyClone Laboratories, Logan, UT, USA). Trypsin inhibitor from glycine max soybean (Sigma-Aldrich Co.) was added to deactivate the trypsin. The cells were pre-incubated with and without WEGST (50 µg/mL) for 30 min; 3 × 105 cells were then seeded on collagen I (10 µg/mL)-coated plates and harvested at various times, as indicated. Total protein was extracted from each cell and transferred to PVDF membranes, as described above. The membranes were first used for the detection of phosphor-FAK expression using the phosphospecific antibody (p-FAK; BD Biosciences, San Jose, CA, USA), and the blot was stripped through incubation with 1 N NaOH during 1–2 min at room temperature; it was then washed three times with TBS-T and used for the detection of total FAK (t-FAK) using the mouse anti-FAK antibody (BD Biosciences, San Jose, CA, USA). The activation rate of FAK (p-FAK/t-FAK) was estimated using the Image J program.
+ Open protocol
+ Expand
2

Protein Extraction and Immunoblotting

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cell extracts were prepared in lysis buffer (50 mM Tris-HCl pH 6.8, 120 mM NaCl, 1 mM EDTA, 0.5% Nonidet P-40, 1 mM PMSF, 1 mM β-mercaptoethanol, 1 mM Na3VO4, 1 mM NaF, and 1 μg/ml aprotinin) for 30 min on ice, and centrifuged at 15,000 × g for 15 min to remove insoluble materials. Lysates were centrifuged at 14,000 rpm for 10 min, and the resulting supernatants were used for immunoblotting. Protein concentrations were determined using the Pierce protein assay reagent (Pierce, Rockford, IL, USA). Cell lysates containing equal amounts of protein (40 μg) were analyzed by SDS–PAGE. After transferring to Hybond-P membranes and blocking with 5% milk/0.1% TBST at room temperature for 60 min, membranes were incubated first with primary antibodies AR (Millipore PG-21 #06-680), FAK (BD Biosciences #610088), p-FAK(BD Biosciences #611722), ARA5 (BD Biosciences #6111645), Intergrin β1 (Cell Signaling #4706), GAPDH (Millipore #AB2302) overnight at 4 °C, and then with HRP-conjugated anti-mouse or anti-rabbit IgG secondary antibodies. Immunoreactive proteins were detected using an enhanced chemiluminescence detection kit (Millipore). Signals were analyzed and quantified using an LAS-3000 imaging system (Fujifilm, Tokyo, Japan).
+ Open protocol
+ Expand
3

Detailed Antibody Inventory for Western Blotting and IHC

Check if the same lab product or an alternative is used in the 5 most similar protocols
For western blotting and immunohistochemistry (IHC) staining, rabbit anti–PSMB8, GAPDH, p65, and FAK were purchased from Cell Signaling Technology. Moreover, rabbit anti–VEGFR and anti–CD31 were purchased from Abcam. Mouse anti–VEGFA was purchased from Santa Cruz. Mouse anti–phospho‐STAT3, p‐FAK, p‐paxillin, paxillin, MMP2, MMP9, and Cathepsin B were purchased from BD. Information on the antibodies is shown in Table S1.
+ Open protocol
+ Expand
4

Integrin and Growth Factor Signaling

Check if the same lab product or an alternative is used in the 5 most similar protocols
The experiments were performed using the following antibodies: Antibody against human integrin β1 subunit (P5D2) was from Developmental Studies Hybridoma Bank, University of Iowa; Mouse mAb against Smad2, rabbit mAbs against EGFR, p-EGFR, ERK1/2, p-ERK1/2, AKT, p-AKT, p-Src, and p-Smad2 were from Cell Signaling Technology; rabbit pAb to β4 integrin and goat antibody against α3 integrin were from Santa Cruz Biotechnology (Santa Cruz, CA); mouse mAbs against β1 integrin, α5 integrin, β4 integrin, αv integrin, FAK, p-FAK, and rat antibody against α6 integrin were from BD Biosciences; mAb against α-tubulin and α-SMA were from Sigma; mouse mAbs against Src was from upstate biotechnology. Alexa Fluor® 488 and 647 goat anti-mouse IgG was obtained from Invitrogen (Life Technologies). The peroxidase-conjugate goat antibody against mouse, rabbit and goat IgG were obtained from Chemicon and Cell Signaling Technology. The TO-PRO-3 was from Molecular Probes; the selective EGFR blocker Tyrphostin AG1478, fibronectin and laminin-332 were obtained from Sigma; the Sulfo-EGS was from Thermo Scientific; and, the Quantikine Human EGF Immunoassay kit was from R&D Systems.
+ Open protocol
+ Expand
5

Immunofluorescence Analysis of Focal Adhesions

Check if the same lab product or an alternative is used in the 5 most similar protocols
Transfected HT1080 cells were plated on coverslips or on collagen (10 μg/mL) coated coverslips for 24 h. For nocodazole treatment, 10 μM nocodazole was applied for additional 1 h. Cells were fixed with 3.7% formaldehyde for 20 min, then washed three times with phosphate-buffered saline (PBS) and 0.1% Triton-X 100 in PBS for 1 min. Fixed HT1080 cells were incubated with primary antibodies Rab11 (1:100, Cell Signaling Technology), p-FAK (1:150, BD Biosciences), vinculin (1:100, Sigma, MO, USA), paxillin (1:100, Millipore, MA, USA) or Rac1 antibody (1:100, BD Biosciences) for 1 h at room temperature, and after washing three times with PBS, the HT1080 cells were incubated with an appropriate fluorescence-conjugated secondary antibody, Cy2-conjugated anti-rabbit antibody or Cy3-conjugated anti-mouse antibody, at room temperature for 1 h. The coverslips were then mounted on slides and observed using a Zeiss LSM 510 META confocal microscope (Zeiss, Germany). For vinculin and Rac1 expression level, the distribution area was the region of interest with ImageJ software (National Institutes of Health, Bethesda, MD, USA) and the expression intensities were counted and quantified.
+ Open protocol
+ Expand
6

Detecting Rab11-Mediated FAK Phosphorylation

Check if the same lab product or an alternative is used in the 5 most similar protocols
HT1080 cells were transfected with GFP-tagged Rab11, and cell lysates were collected in RIPA buffer with 25 mM Tris/150 mM NaCl (pH 7.4), including 1% NP-40, 5% glycerol, 0.5 M EDTA, 100 mM sodium orthovanadate 1:1000, Cocktail 1:50 and 100 mM PMSF 1:500. Cell lysates were incubated with GFP antibody or nonspecific immunoglobulin G overnight at 4°C, and then with protein A/G (Thermo Scientific) for 4 h. The precipitated protein complex was subjected to SDS-gel, and Rab11 (1:1000, Cell Signaling Technology) and p-FAK (1:1000, BD Biosciences) antibodies were used to detect proteins by western blotting.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!