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3 protocols using sirtuin 3 sirt3

1

Mouse Liver Protein Extraction and Analysis

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Mouse liver tissues or cells were homogenised in lysis buffer (60 mM pH 6.8 Tris-HCl, 25% glycerol, 2% SDS, 5% β-mercaptoethanol, and 19% (vol/vol) ddH2O were supplemented with 1 mM PMSF (Yeason, Shanghai, China) and protease inhibitor cocktail (MedChem Express). HMGCS2 (Santa Cruz), Sirtuin 3 (SIRT3; Proteintech, Wuhan, China), CPT1a (Proteintech), CPT2 (Proteintech), COXIV (Proteintech), p-p65 (Biological Reagents Company Limited; Shanghai, China), p65 (Biological Reagents Company Limited), ac-p65 (Biological Reagents Company Limited), ac-H3 (Active Motif; Shanghai, China), ac-H4 (Active Motif), and β-actin (Proteintech) were used for Western blotting. For immunoprecipitation, cells or mitochondrial lysates were immunoprecipitated with the indicated antibody at 4°C for 4 h, and then protein A/G Agarose was added at room temperature for 2 h. The beads were washed with ice-cold lysis buffer and boiled in SDS-PAGE loading buffer for 5 min before electrophoresis.
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2

Antifibrotic Effects of AKF-PD

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AKF-PD (lot No. 20190810) was purchased from Haikou Pharma (Haikou, China). ATP assays were obtained from Beyotime Biotechnology (Shanghai, China). Recombinant human transforming growth factor-β (TGF-β) was provided by PeproTech (Rocky Hill, USA). MitoSOX Deep Red was purchased from Invitrogen (New York, USA). The following antibodies for immunohistochemistry and western blotting were used: sirtuin 1 (SIRT1), NOX4, E-cadherin, superoxide dismutase 2 (SOD2), and sirtuin 3 (SIRT3) antibodies, which were purchased from Proteintech (San Diego, USA). Other antibodies were from Abcam (Cambridge, UK): collagen I, collagen III, fibronectin (FN), total OXPHOS complexes, and 4-hydroxynonenal (4HNE). Anti-alpha smooth muscle actin (α-SMA) antibody and anti-GAPDH antibody were obtained from Sigma (St. Louis, MO, USA) and Cell Signaling Technology (Boston, MA, USA), respectively. All other chemicals were of analytical grade.
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3

Protein Expression Analysis in Kidney Cortex

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The kidney cortexes were homogenized in RIPA buffer (Cell Signaling Technology, Beverly, MA, USA) containing a protease inhibitor cocktail. Equal amounts of kidney cortex lysates were loaded on and electrophoresed through 7% or 10% SDS-PAGE gels and were then transferred to nitrocellulose membranes (Millipore, Billerica, MA, USA). After blocking with 5% skim milk, the membranes were incubated with primary antibodies against fibronectin (FN, 1 : 250), type IV collagen (Col-IV, 1 : 250) (Abcam, Cambridge, MA, USA), α-smooth muscle actin (α-SMA, 1 : 1000), QPRT (1 : 500), β-actin (1 : 5000) (Sigma-Aldrich, St Louis, MO, USA), sirtuin 3 (SIRT3, 1 : 1000) (Proteintech, Wuhan, China), dynamin-related protein 1 (Drp-1, 1 : 1000) (Cell Signaling Technology, Beverly, MA, USA), and optic atrophy 1 (OPA-1, 1 : 2000) (BD Biosciences, San Jose, CA, USA) at 4°C overnight. After incubation with horseradish peroxidase (HRP)-conjugated secondary antibodies (1 : 2000) (Life Technologies, Carlsbad, CA, USA) and Immobilon Western Chemiluminescent HRP Substrate (Millipore, Billerica, MA, USA), the blots were visualized using the ChemiDoc MP Imaging System (BioRad Laboratories, Hercules, CA, USA). Bands were quantified by densitometry using Image Lab software version 5.1 (BioRad Laboratories, Hercules, CA, USA).
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