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36 protocols using di water

1

Extracellular Vesicle Enrichment via nanoDLD

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NanoDLD chips were fabricated in 200 mm silicon wafers, diced into individual chips, wetted in DI water (Millipore) and primed with 5% bovine serum albumin (BSA) to reduce non-specific adsorption and fouling as described in Smith et al., 2018 (link). Individual chips were placed in custom-built acrylic flow cells prior to running serum samples. Post filtered (Whatman 0.2 um filters) serum samples (500 ul) were processed using nanoDLD chips with a gap of G= 150 nm at a flow rate of 4 μl/min for 60 min. Sample fluid enriched in EV’s of size between 60 nm and 150 nm (as determined by EM and NTA) was removed from the nanoDLD bump outlet. Samples were stored at 4°C for RNA-seq processing.
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2

Chitosan-Based Biomaterial Synthesis

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O-Phospho-L-serine (OPS, (HO)2P(O)OCH2CH(NH2)CO2H), chitosan (Chi) with low molecular weight (LM, Mw = 50–190 kDa, degree of deacetylation, DD = 96.1%) and high molecular weight (HM, Mw = 310–375 kDa, DD = 78.2%), N-Ethyl-N’-[3-dimethylaminopropyl]carbodiimide hydrochloride (EDC, C8H17N3·HCl), N-hydroxysulfosuccinimide sodium salt (Sulfo-NHS, C4H4NNaO6S), ethalonamine hydrochloride (H2NCH2CH2OH·HCl), sodium hydroxide (NaOH), cadmium perchlorate hydrate (Cd(ClO4)2·6H2O) and sodium sulfide (Na2S∙9H2O) were supplied by Merck (Darmstadt, Germany). Acetic acid was supplied by Labsynth (Diadema, São Paulo, Brazil).
Chemicals were provided without any purification process. Deionized water (DI water, Millipore SimplicityTM, Burlington, MA, USA) with resistivity of 18 MΩ cm was used for the solutions, at room temperature (RT, 23 ± 2 °C), unless when specified otherwise.
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3

Nanopore-based DNA Translocation Analysis

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The platform comprises a 30-nm-thick Si3N4 membrane with a 5-nm-diameter nanopore. The membrane is mounted in a fluidic cell, separating the cis. and trans. reservoirs. The cis. reservoir is filled with an aqueous electrolyte/DNA solution. The 1 M KCl electrolyte (measured PH = 6.9, no buffer) was made using DI water (millipore, MA). The 2-K-base-pairs dsDNA was purchased from Fermentas (Thermo Scientific, PA, US). DNA-test solutions were mixed using fresh DI water and their PH values were confirmed by measurements, right before translocation experiments. Fluidic cells were flushed with fresh solutions before every experiment. Two Ag/AgCl electrodes are immersed into two reservoirs, electronically connecting the flow cell to an ionic current measurement set-up. Thus, DNA molecules in the cis. compartment were electrically driven to the trans. compartment through the nanopore. The set-up includes a computer-controlled patch clamp amplifier (Axon Axopatch 200B, Molecular Devices), and a DAQ card (Digidata 1440A, Molecular Devices). All data were acquired at 250 KHz sampling and were analyzed using a 100 KHz low-pass filter. We extracted the mean dwell time from the histogram of dwell times by an exponential fitting.
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4

Dopamine-Graphite Composite Synthesis

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All the materials, including dopamine hydrochloride (DA, 98%), graphite, tris(hydroxymethyl)-aminomethane (Tris, ≥99%), and polyacrylonitrile (PAN, Mw 150,000) were used as-received from Aladdin Chemical Co., Ltd. (Shanghai, China). All aqueous solutions were prepared with doubly distilled water (DI water) from a Millipore system (Chengdu, China) (>18 MΩ cm).
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5

Synthesis of Uncoated Silver Nanoparticles

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Uncoated AgNPs were produced by the solution-phase method (Polte et al. 2012 (link); Van Hyning and Zukoski 1998 (link)). Silver nitrate (AgNO3, Sigma-Aldrich) was used as the precursor and reduced by sodium borohydride (NaBH4, Sigma-Aldrich) to form AgNPs at room temperature (19 ± 4 °C). All the glassware for AgNPs synthesis was soaked in 10 % HNO3 overnight and rinsed with copious amounts of deionized (DI) water (18.2 mΩ, Millipore), followed by drying in an ambient environment. The AgNO3 solution (100 mL, 0.12 mM) was poured into the NaBH4 solution (100 mL, 3 mM) in a 500-mL beaker. The NaBH4 concentration was in 25-fold excess. The mixture was homogenized by magnetic stirring (1200 rpm). The NaBH4 solution was freshly prepared to reduce the degradation resulting from its reaction with water to produce H2 and BO4. The solution turned to grey within a few seconds after mixing and changed to light yellow after a few minutes. As the reaction continued, the colour slowly changed to dark yellow at ~25 min and back to yellow. After 1 h, the stirring was stopped, and the solution was stored for 24 h in the dark at room temperature. Finally, the stirring bar was removed and the AgNP suspension was transferred into glass bottles (250 mL, Duran) and stored at 4 °C in the dark.
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6

Phosphate Buffer Solution Preparation

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Phosphate buffer
solution (PBS) was prepared by dissolving one tablet (Sigma-Aldrich)
in 200 mL of DI water (Millipore, 18.2 MΩ resistivity). FBS
from Gibco Invitrogen, with a nominal composition of 23.9 g L–1 BSA, 13.2 g mL–1 α-globulin,
4.5 g L–1 β-globulin, and 0.155 g L–1 γ-globulin was used. The FBS was diluted with PBS at a concentration
of 10 vol % and used without further modification.
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7

Emulsion Fouling Characterization of Shale Gas Wastewater

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Vegetable oil and petroleum oils with different carbon numbers, namely n-hexane, 2,2,4-trimethylpentane (iso-octane), isopar-G, n-hexadecane and mineral oil were tested (see further information of these oils in Supplementary Experimental Details 2.3). The oil concentrations of emulsions were ranged from 2.5 to 100 g/L (g oil/L water). Triton X-100 was used as surfactant with the surfactant/oil ratios varying from 0.0 to 0.2. In order to simulate shale gas wastewater, hexadecane-in-water emulsions of different salinity (0 ~ 256 g/L total dissolved salts) were prepared according to the following procedure. Firstly, NaCl, MgSO4 and Al2(SO4)3 were dissolved in DI water (Millipore ultrapure water, 18 MΩ cm) with molar concentration 1:1:1. Secondly, surfactant and oil were added into the salt solution sequentially under mechanical stirring. Thirdly, the mixture was sonicated under 100 W at 20 °C for 3 hours to obtain a homogenous milky emulsion. Fresh emulsions were immediately used in the subsequent fouling tests.
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8

Synthesis of Pt-SnO2 Nanocomposites

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All chemicals were utilized as received without further purification. Chloroplatinic acid hexahydrate [H2PtCl6·6H2O], tin(ii) chloride dehydrate [SnCl2·2H2O], urea [CO(NH2)2] and ethylene glycol (EG) were of analytical reagent (A.R.) grade and purchased from Sinopharm Chemical Reagent Co., Ltd. Commercial 30 wt% Pt/C was purchased from Johnson Matthey. Deionized water (DI water, Millipore, 18.2 MΩ at 25 °C) was used in all processes.
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9

Gold Nanoparticle Synthesis and Characterization

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Tetrachloroauric(iii) acid trihydrate (HAuCl4·3H2O, 99.5%), trisodium citrate dihydrate (TSC, 99.0%), silver nitrate (AgNO3, 99.8%), sodium borohydride (NaBH4, 96.0%), l(+)-ascorbic acid (AA, 99.0%), n-hexane (C6H14, anhydrous, >99%), and DI water (>18 MW, Millipore, conductivity <4.3 μS cm−1) were purchased from Sigma-Aldrich (Darmstadt, Germany). Cetyltrimethylammonium bromide (CTAB, 99.0%) was purchased from HIMEDIA (Mumbai, India). Crystal violet (C25N3H30Cl, 99.0%) was purchased from AK Scientific, Inc. (Union City, USA). The above-mentioned chemicals were analytical grade and used without further purification. All experiment solutions were prepared using deionized water (DI). Before synthesizing the nanoparticles, glassware and stirring bars were washed with aqua regia water (HCl : HNO3, optimal in a molar ratio of 3 : 1), and then thoroughly washed with deionized water.
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10

Synthesis of Gold Nanoparticles

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Chloroauric acid (HAuCl4·4H2O) was purchased from Sinopharm Chemical Reagent Co., Ltd. (Beijing, China). Silver nitrate (AgNO3, 99.0%), L (+)-ascorbic acid (C6H8O6, 99.0%), sodium borohydride (NaBH4, 96.0%), trisodium citrate (TSC, 99.0%), and DI water (>18 MW, Millipore, conductivity <4.3 μS cm−1) were obtained from Sigma-Aldrich (Darmstadt, Germany). Hydrogen peroxide (H2O2, 30.0%) and sodium hydroxide (NaOH, 96.0%) were obtained from Xilong Scientific Chemical Reagent Co., Ltd. (Shantou, China). Cetyltrimethylammonium bromide (CTAB, 99.0%) was purchased from HIMEDIA (Mumbai, India). Thiram (C6H12N2S4, 97.0%) was purchased from AK Scientific, Inc. (Union City, USA). All reagents were used without further purification, and the aqueous solution experiments were prepared using DI water. All glassware and magnetic stirring bars were cleaned with aqua regia (HCl/HNO3, volume ratio 3 : 1) and thoroughly rinsed with Millipore water (conductivity <4.3 μS cm−1) several times prior to use in all experiments.
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