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107 protocols using tcs sp8 mp

1

Liposomal Encapsulation and Cellular Uptake of Mebendazole

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The encapsulation of MF into liposomes
was verified by spectrofluorometric measurements (spectrofluorometer
Chronos DFD, ISS) and confocal microscopy (Leica TCS SP8MP, Leica
Microsystems, Germany) based on autofluorescence properties of MF
(Figures S5 and S6). The excitation and
emission spectra of MF in 96% ethanol were measured using Chronos
DFD, ISS, and Vinci software. Transition of MF 2 μM in water
into the model of lipid membrane (EPC, 38 μM) was assessed directly
(t = 0) after mixing both aqueous dispersions by
spectrofluorometric measurements. The cellular uptake of MF liposomal
(1 μM) by THP-1-XBlue-MD2-CD14 cells was observed at 24 h, and
the uptake of PEG-VIII (10 μM) with incorporated
18:1 Liss Rhod PE (0.1 mol %) by BV-2 cells was observed immediately
(t = 0), 60, 90, 120, and 240 min after treatment
using super-resolution live cell imaging (Leica TCS SP8MP, Leica Microsystems,
Germany).
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2

Multimodal Fluorescence Microscopy Techniques

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Three fluorescence systems were used in the experiment: two‐photon laser confocal microscope (Leica TCS SP8‐MP, WZ, German) for presentation of subcellular structure, High‐Content Screening System (PerkinElmer Operetta, MA, USA) for providing long period live cell imaging and an inverted laser confocal microscope (Zeiss LSM 880 with Airyscan, Oberkochen, Germany) for high quality confocal image. In living cell fluorescence imaging, all miRNAs (for cell incubation or transfection) were used at 50 nm. The concentrations and incubation time of MitoTracker Green FM, LysoTracker Green DND‐26, ER‐Tracker Green, Hoechst 33342, cytochalasin B, rottlerin, dynasore, nocodazole, EIPA, Dibucaine, and Sphingosine were listed in Extended data, Table S2 of the Supporting Information. Cell transfection with small RNAs was according to manufacturer's protocol. To observe cells on upright microscope, cells were prepared on glass‐bottom dish. All cells were living when images were taken. Fluorescence images taken by Operetta High‐Content Screening System were analyzed by Columbus 2.4.1, a cellular imaging and analysis software provided by PerkinElmer. Fluorescence intensity of images taken by Leica TCS SP8‐MP was analyzed by Adobe Photoshop. The fluorescence intensity data were shown in Figure 1a, 1b, 3e, 3f, 4d, and 6a.
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3

Quantification of NF-kB Nuclear Translocation

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Gelatin-coated coverslips placed in MW6 plates were used to grow HUVECs until subconfluence. Cells were pretreated with HT-C6 for 30 min and then induced with 20 ng/mL TNF-α for 15 min in presence of the compound. After fixation in formalin solution (Sigma-Aldrich/Merck, Darmstadt, Germany), cells were permeabilized in Triton X-100 0.5%-PBS and blocked in 5% BSA-PBS. RelA/p65 mouse mAb (sc-8008; Santa Cruz Biotechnology, Dallas, TX, USA) was used for incubation during 1 h at room temperature in a wet chamber. Coverslips were washed in PBS prior to incubation with Alexa Fluor 568-linked anti-mouse IgG antibody (A11004, Invitrogen, Thermo Fisher Scientific, Waltham, MA, USA). Then, 3 washes in PBS were performed and 1 mg/mL Hoechst 33342 was used for 5 min incubation. Coverslips were mounted in glass slides using 1:10 (vol-vol) glycerol-water solution. Fluorescence-confocal microscope Leica TCS SP8 MP and Leica Application Suite X software version 5.1.0 (Leica Microsystems, Wetzlar, Germany) were used for sample visualization and imaging capture. Fiji software (https://imagej.net/contribute/citing, accessed on 29 June 2023) [21 (link)] was used for quantification of nuclear/cytosolic signals in at least 5 images of each experimental condition. Three independent replicates were performed for this assay.
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4

Subcellular Localization of LsAPRR2 Protein

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Primer design based on the complete coding sequence (CDS) of HG_GLEAN_10010973 was obtained by RACE (Supplementary Table S1). The target fragment without the stop codon was amplified by PCR and cloned into the modified vector pBI221-EGFP (Li et al., 2012 (link); Li et al., 2022 (link)). The 35S::GFP and 35S::GFP-LsAPRR2 fusion vectors were transformed into Agrobacterium tumefaciens GV3101 strain. Transformed Agrobacterium tumefaciens cells were infiltrated into the inner epidermal cells of onion bulbs and incubated at 25°C in a light incubator. GFP signals were detected at 16h post-transformation using a laser confocal scanning microscope LEICA-TCS-SP8MP (Leica Germany), and nuclei were stained using 4 ‘, 6-diamidino-2-phenylindole (DAPI). The excitation wavelength was 488 nm.
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5

Immunofluorescence Microscopy of Cells

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Ctrl and SAMHD1-KD cells were mounted on glass slides, fixed in 4% paraformaldehyde, permeabilized with 0.1% Triton X-100, and then blocked with 10% goat serum in PBS. After incubating with primary antibodies, cells were probed with fluorescent secondary antibodies and stained by DAPI (Solarbio, S2110, Beijing, China). Confocal microscopic images were captured by Leica TCS SP8 MP (Leica, Wetzlar, Germany) and measured by the Image J software (National Institutes of Health, USA). The antibodies applied in IF were listed in Table S3.
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6

Amygdalar Cell Profiling in Mice

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21 days after injection mice were deeply anesthetized with isoflurane (5%) and were perfused transcardially with 0.9% saline (5–10 ml) followed by 10% buffered formalin in 0.1 M PBS (50 ml). The brains were sectioned at 40 μm thickness on a compresstome (Precisionary Instruments, Greenville, NC, USA). Coronal sections were scanned using a Leica multiphoton microscope (Leica TCS SP8-MP) to visualize tdTomato and GFP in the amygdala as well as in the injection sites. TdTomato and GFP positive cells will clear soma were counted on digitized images using MCID image analysis software (St. Catharines, ON, Canada).
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7

Intracellular Calcium Imaging of Motor Neurons

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Intracellular Ca2+ generation was assessed using the Ca2+-specific fluorescent dye Fluo 3-AM (Beyotime, Beijing, China). The MNs, plated on confocal dishes, could reach optimal confluence in the 28th day of differentiation, at which time they were washed three times with PBS and loaded with 5 μmol/L Fluo 3-AM at 37 °C for 45 min. Then they were washed with PBS, and observed under a Leica confocal microscope (Leica TCS SP8 MP, Chicago, IL). Fluo 3-AM was observed at a wavelength excitation of 488 nm.
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8

Immunofluorescence Assay for Stem Cell Markers

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The cells growing on slides were fixed in 4% paraformaldehyde (PFA) for 30 min, and then permeabilized with 0.5% Triton™ X-100 for 15 min. Slides were blocked in 2.5% bovine serum albumin (Sigma-Aldrich, St. Louis, MO, USA) for 1 h and incubated in primary antibodies overnight at 4 °C, and subsequently incubated with secondary antibodies (AlexaFluor®, Invitrogen, Carlsbad, California, USA) for 1 h at room temperature. Imaging was performed using a Leica confocal microscope (Leica TCS SP8 MP, Chicago, IL). The primary antibodies included: SSEA-4 (1:500; Millipore, Billerica, MA, USA), TRA1-60 (1:500; Millipore, Billerica, MA, USA), TRA1-81 (1:500; Millipore, Billerica, MA, USA), Nanog (1:500; Cosmobio, Tokyo, Japan), OCT3/4 (1:500; Santa Cruz Biotechnology, Santa Cruz, CA, USA), SOX2 (1:500; Santa Cruz Biotechnology, Santa Cruz, CA, USA), TUJ1 (1:1000; Covance, Princeton, NJ, USA), HB9 (1:100; Developmental Studies Hybridoma Bank (DSHB), Iowa City, IA, USA), and ISL1/2 (1:200; DSHB, Iowa City, IA, USA).
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9

Subcellular Localization in N. benthamiana

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For subcellular localization experiments, fluorescence in RFP-H2B transgenic N. benthamiana leaf epidermal cells or protoplasts inoculated with pCHF3-eGFP and pCHF3-P2-eGFP was examined by confocal microscopy (Leica TCS SP8MP; Leica, Mannheim, Germany) 2- to 3-days post inoculation (dpi) as described (Shen et al., 2011 (link); Yoo, Cho & Sheen, 2007 (link)).
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10

Cellular Uptake of DOX and P-TPP-DOX

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DU145 cells (10 × 105) were inoculated on Nunc™ glass base dishes (ThermoFisher Scientific, Rochester, NY, USA) and left to grow overnight in 2 mL of DMEM complete media in the same conditions as elaborated earlier in the cell culture section. Cells were subsequently incubated with DOX, P-TPP-DOX and a combination of P-TPP-DOX with P-TPP-CQ for 1 h or 2 h in Opti-MEM. Specimens were examined on a multiphoton confocal microscope Leica TCS SP8 MP (Wetzlar, Germany) equipped with an Argon laser (excitation lines at 458, 476, 488, 496 and 514 nm), a DPSS 561 laser (excitation line at 561 nm) and an IR MaiTai DeepSee Ti:Sapphire laser (Spectra-Physics, Santa Clara, CA, USA) for multiphoton applications. Images were acquired with the spectral detector of the microscope using appropriate emission wavelength ranges; DOX (red) was excited at 561 nm with the DPSS laser, and emission was recorded between 570 and 650 nm, while MitoTracker® Green FM was excited at 488 nm with the argon laser, and emission was recorded between 500 and 550 nm. Images were acquired with the LAS X software (Leica Microsystems CMS GmbH, Wetzlar, Germany) and are presented without any post-processing.
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