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58 protocols using leica uc7

1

Electron Microscopy Sample Preparation

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Cells grown on coverslip are fixed in 2.5% glutaraldehyde in phosphate buffer for 1 h RT and 24 h at 4 °C, post fixed with 1% osmium tetroxide, dehydrated and epon-embedded as described [30 (link)]. Infiltration is started by placing the coverslips in a 1:1 mixture of absolute ethanol and Epon 812 for 1 h and change for fresh resin 2 times 1 h. They were placed upside-down above an Eppendorf cap full of fresh resin and placed in a 65 °C oven. Then, Eppendorf caps were separated from coverslips by diving them in liquid nitrogen. Subsequently, Epon blocks were sectioned using an ultramicrotome (UC7 Leica) and 70 nm ultra-thin sections were mounted on 100-mesh collodion-coated copper grids, stained with uranyl acetate and lead citrate. The quality of the sections was checked by using low magnification micrographs (X1500). All the experiments were performed at the MEA platform of Montpellier University using a JEOL 1400 Plus electron microscope.
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2

Multimodal Imaging of C. elegans

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C. elegans were fixed with 4% formaldehyde and 0.1% glutaraldehyde in 0.1 M sodium cacodylate buffer, immersed in gelatine 12%, cryoprotected with 2.3 M sucrose. Samples were frozen in liquid nitrogen, and using an ARTOS 3D ultracut system equipped with a cryochamber EM UC7 Leica, 110 nm ultrathin cryosections were collected on 7×7 mm2 silicon wafers with fluorescent beads (PS-Speck, ThermoFisher). Light microscopy images were acquired with a wide-field microscope, Thunder Leica, objective 100×/1.44. Electron microscopy images from the very same section were taken with a SEM Auriga 40 Zeiss microscope at an acceleration voltage of 800 eV, with an InLens detector, pixel size 4 nm, and dwell time 100 µs. Registration and alignment of the light and electron microscopy images were done with TrakEM2 (Cardona et al., 2012 (link)) within the open-source platform Fiji (Schindelin et al., 2012 (link)).
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3

TEM Analysis of MSN-1 Treated MCF-7 Cells

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Human MCF-7 cell lines were seeded on cover glasses (20 mm ∅) and left to incubate for 24 h. Afterwards, the cells were treated with 100 µg mL -1 MSN-1 then left to incubate for another 24 h. After the end of the incubation period, the cells were washed 3 times with PBS, and then were fixed with 2.5% (v/v) of glutaraldehyde in 0.1 M sodium cacodylate buffer at 4 °C. Samples were post-fixed with 1% osmium tetroxide, dehydrated by a graded series of alcohols, placed in a 1 : 1 mixture of absolute ethanol and Epon 812 and changed to fresh resin twice. All these steps were performed using Pelco BioWave Pro+. Samples were placed upside-down upon Eppendorf caps full of fresh resin and placed in a 65 °C oven and partially polymerized. Then, the samples were separated from the Eppendorf caps by immersing them in liquid nitrogen. Afterwards, the Epon blocks were sectioned on an ultramicrotome (UC7 Leica). The obtained ultra-thin sections of 70 nm were mounted on 100-mesh collodion-coated copper grids (stained with uranyl acetate and lead citrate), and finally observed with a JEOL 1400Plus electron microscope.
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4

Ultrastructural Analysis of Sorghum Embryo

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Fresh sorghum embryo tissue of 1 mm3 in size was collected 36 h after germination, and transferred to an EP tube filled with a new electron microscope fixative for further fixing. Then, the processing method of the sample was referred to Nie et al. [32 (link)]. The samples were stained in 2% uranyl acetate saturated alcohol solution for 8 min in the dark. Sections were cut with an ultrathin slicer (LEICA UC7, Leica, Wetzlar, Germany). A transmission electron microscope (HT7700, Hitachi, Tokyo, Japan) was used for observation and image analysis.
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5

Ultrastructural Tissue Preparation for TEM

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Tissues were microwaved at full power (700W microwave oven) for 10 s to enhance penetration of the fixative through the depth of the slice with a final temperature of <35°C. Slices were left overnight in the same fixative and then rinsed with 0.1M phosphate buffer (4× for 15 min). First, they were immersed in 1% osmium for 1 hour and rinsed in buffer (3× for 15 min). Next, they were immersed in ascending concentrations of acetone (50, 70, 90, and 100%). Finally, they were quickly immersed in Spurr's resin at room temperature overnight and then embedded in coffin molds in Spurr's resin and cured for 8 hours at 70°C in an oven. They were then vibrasliced at 60 nm (Leica UC7, Leica). Ultrathin sections were counterstained with saturated aqueous uranyl acetate, followed by Reynolds lead citrate for 5 min. Sections were photographed with a transmission electron radiography (Hitachi H-7500, Hitachi) at 5,000× magnification.
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6

Mitochondrial Ultrastructure Analysis

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Mitochondrial ultrastructure was assessed in several pieces obtained from different regions of the left ventricle that were pre-fixed in 2.5% glutaraldehyde in 0.1M sodium cacodylate buffer, post-fixed in 2% osmium tetroxide (OsO4) in 0.1M sodium cacodylate buffer, dehydrated in an ethyl alcohol series, embedded with epoxy resin, and thermally polymerized as previously described (Katragadda et al., 2009 (link)). Ultra thin-sections (60 nm) were cut by an ultramicrotome (Leica UC7, Leica Microsystems Inc., ON, Canada) and then stained with 4% uranyl acetate and Reinold's lead citrate. The contrasted sections were imaged under a Hitachi H-7650 transmission electron microscope at 80 kV equipped with a 16 megapixel EMCCD camera (XR111, Advanced Microscopy Technique, MA, USA) was used for viewing the sections (Cho et al., 2007 (link); Katragadda et al., 2009 (link)).
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7

Quantitative analysis of C. albicans cell wall

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C. albicans suspensions were adjusted to an initial concentration of 5 × 104 cells/ml, and the suspensions were then transferred to new EP tubes, treated with different concentrations of EVs (0, 120 µg/ml), and cultured in KSFM (37°C, 5% CO2) for 12 h. Each cell suspension was collected by centrifugation (12000 rpm, 10 min), and the pellet was then suspended and incubated at 4°C in electron microscope fixative for 4h. The samples were washed three times with calcium carbonate buffer solution and treated with 1% agarose solution. The agarose blocks with samples were post fixed with 1% OsO4 in 0.1 M PB (pH 7.4) for 2 h at room temperature while protected from light. After the OsO4 was removed, the tissues were rinsed in 0.1 M PB (pH 7.4) 3 times for 15 min each. Then, the samples were dehydrated with an alcohol and acetone gradient. The cells were then embedded and polymerized. Thin slices (60−80 nm thick) were obtained by using a diamond cutter (Daitome, Ultra 45°) on a Leica superslicer (Leica, Leica UC7). The samples were stained with a uranium acetate-saturated alcohol solution (8 min) and lead citrate (8 min).The cells were then analyzed and photographed using TEM (Hitachi, HT7800/HT7700). The integrated optical density (IOD) and thickness of C. albicans cell wall were quantified and analyzed using Image-Pro Plus image analysis software Version 7.0.1 (Media Cybernetics Inc).
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8

Leaf Tissue Structural Analysis

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On day 30, paraffin sections (5 mm × 5 mm) of the samples were taken, fixed with a formalin–acetic acid–alcohol fixative, dehydrated in an alcohol and xylene series, embedded in paraffin, cross-sectioned to a thickness of 10 μm, and red–solid green stained. The total thickness of the transverse sections, as well as the thickness of the upper epidermis, palisade mesophyll tissue, and spongy mesophyll tissue, was measured under a light microscope using a micrometer.
Pieces of the functional leaves were sampled (1 mm × 1 mm), quickly placed in a 2.5% glutaraldehyde fixative solution, and evacuated with a vacuum pump. After the pieces sank to the bottom of the fixative solution, they were maintained at room temperature (25 °C) for 2 h, and then transferred to a refrigerator and stored at 4 °C. The samples were rinsed three times with 0.1 M phosphate buffer (PB, pH = 7.4) for 15 min each, fixed with 1% citric acid in 0.1 M phosphate-buffered saline (pH = 7.4) at room temperature (25 °C) for 5 h, and rinsed again three times with 0.1 M PB (pH = 7.4) for 15 min each. The leaf tissue was sectioned on a dehydration-infiltration-embedding-slicer (Leica, LeicaUC7) and imaged using a section-staining-transmission electron microscope (HITACHI, HT7700).
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9

Transmission Electron Microscopy Specimen Preparation

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The samples
were placed in 2% cooled glutaraldehyde and fixed for 24 h. After
fixation, the sample was treated with 1% osmic acid at room temperature
for 7 h. Then samples were dehydrated with increasing concentrations
of ethanol (50–100%, each concentration for 30 min). After
embedding with EPON812, polymerization in a 60 °C oven, and block
trimming, the samples were sliced into a thickness of 60–80
nm using an ultrathin slicer (Leica, Leica UC7, Germany). Slices were
placed on a copper mesh, dried in 2% uranium acetate for 8 min, washed
with deionized water, and then dyed in 2.6% lead citrate solution
for 8 min. The images were collected and analyzed under a transmission
electron microscope (JEOL, JEM-1010, Japan).
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10

Transmission Electron Microscopy of Autophagy

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Autophagy-related membrane structures were evaluated by transmission electron microscopy. The brains were cut into blocks (Leica UC7, Leica), fixed in stationary liquid (G1102, Servicebio), postfixed in 1% osmium tetroxide for 2 h, dehydrated in a graded series (20–100%) of ethanol, and finally polymerized with an 812 Embedding Kit (90529-77-4, SPI) for 48 h at 60 °C. Each block was observed under a transmission electron microscope (HT7700, Hitachi).
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