The Orbitrap Fusion Lumos used the TMTc+ method (Sonnett et al., 2018 (link)). The mass spectrometer was operated in data-dependent mode with a survey scan ranging from 500–1400 m/z at resolution of 120k (200 m/z). 10 most intense ions for CID MS2 fragmentation using the quadrupole. Only peptides of charge state 2+ were included. Dynamic exclusion range was set to 60 s with mass tolerance of 10ppm. Selected peptides were fragmented using 32% HCD collision energy, and the resultant MS2 spectrum was acquired using the Orbitrap with a resolution of 60k and 0.4 Th isolation window.
Beh c18
The BEH C18 is a high-performance liquid chromatography (HPLC) column developed by Waters Corporation. The column features a bidentate C18 stationary phase chemistry that provides enhanced stability and reproducibility for reversed-phase separations. The BEH C18 column is designed to deliver consistent and reliable performance for a wide range of analytical applications.
Lab products found in correlation
162 protocols using beh c18
Targeted Proteomics Using TMTc+ on Orbitrap Fusion
The Orbitrap Fusion Lumos used the TMTc+ method (Sonnett et al., 2018 (link)). The mass spectrometer was operated in data-dependent mode with a survey scan ranging from 500–1400 m/z at resolution of 120k (200 m/z). 10 most intense ions for CID MS2 fragmentation using the quadrupole. Only peptides of charge state 2+ were included. Dynamic exclusion range was set to 60 s with mass tolerance of 10ppm. Selected peptides were fragmented using 32% HCD collision energy, and the resultant MS2 spectrum was acquired using the Orbitrap with a resolution of 60k and 0.4 Th isolation window.
Rapid Peptide Identification via Online Digestion
buffer (10 mM potassium phosphate, pH 7.0) and diluted 1:1 (vol/vol)
with quench buffer (100 mM potassium phosphate, pH 2.3). The HDX manager
of the nanoACQUITY system was equipped with a Vanguard column (BEH
C18, 130 Å, 1.7 μm, 2.1 mm × 5 mm; Waters) and an
Acquity UPLC column (BEH C18, 130 Å, 1.7 μm, 1.0 mm ×
100 mm; Waters) for peptide trapping and separation, respectively.
Protein digestion was performed online with the UPLC chromatographic
system using an in-house packed protease column (immobilized pepsin
agarose resin) at 15 °C. The generated peptides were trapped
and washed with solvent A at 200 μL/min for 3 min. Subsequently,
peptides were separated by applying a 7.5 min linear gradient from
8 to 35% solvent B at 40 μL/min. Peptides were measured in positive
ion mode between 50 and 2000 m/z on the Xevo G2-XS mass spectrometer.
Experiments were performed in triplicate on the standard two-valve
and extended three-valve configurations applying a standard bottom-up
HDX-MS workflow. Detailed LC settings are provided in the Supporting
Information (
Preparative LC/MS Purification of Compound
Example 4131
The crude material was purified via preparative LC/MS with the following conditions: Column: XBridge C18, 19×200 mm, 5-μm particles; Mobile Phase A: 5:95 acetonitrile:water with 10-mM ammonium acetate; Mobile Phase B: 95:5 acetonitrile:water with 10-mM ammonium acetate; Gradient: 15-55% B over 20 minutes, then a 5-minute hold at 100% B; Flow: 20 mL/min. Fractions containing the desired product were combined and dried via centrifugal evaporation. Two LCMS were used to determine purity. Injection1: Column: Waters BEH C18, 2.0×50 mm, 1.7 μm; Mobile Phase A: 5:95 ACN:H2O with 10 mM NH4OAc; Mobile Phase B: 95:5 ACN:H2O with 10 mM NH4OAc; Temperature: 50° C.; Gradient: 0-100% B over 3 min, then a 0.75 min hold at 100% B; Flow: 1 mL/min. Injection2: Column: Waters BEH C18, 2.0×50 mm, 1.7-μm; Mobile Phase A: 5:95 MeOH:H2O with 10 mM NH4OAc; Mobile Phase B: 95:5 MeOH:H2O with 10 mM NH4OAc; Temperature: 50° C.; Gradient: 0-100% B over 3.5 min, then a 0.5-min hold at 100% B; Flow: 0.5 mL/min.
LCMS (Injection 1 conditions) Rt=1.46 min, ESI m/z 715.1 (M+H).
LCMS (Injection 2 conditions) Rt=1.39 min, ESI m/z 715.1 (M+H).
Targeted Proteomics Using TMTc+ on Orbitrap Fusion
UHPLC-Orbitrap Velos Pro Mass Spectrometry
Purification and Characterization of Isomeric Compound
Example 6
The yield of the second eluting isomer was 3.2 mg, and its estimated purity by LCMS analysis was 98%. Two analytical LC/MS injections were used to determine the final purity. Injection 1 conditions: Column: Waters BEH C18, 2.0×50 mm, 1.7-μm particles; Mobile Phase A: 5:95 acetonitrile:water with 10 mM ammonium acetate; Mobile Phase B: 95:5 acetonitrile:water with 10 mM ammonium acetate; Temperature:50° C.; Gradient: 0% B, 0-100% B over 3 minutes, then a 0.5-minute hold at 100% B; Flow: 1 mL/min; Detection: UV at 220 nm. Retention time: 2.23; M+H=593. Injection 2 conditions: Column: Waters BEH C18, 2.0×50 mm, 1.7-μm particles; Mobile Phase A: 5:95 methanol:water with 10 mM ammoniumacetate; Mobile Phase B: 95:5 methanol:water with 10 mM ammonium acetate; Temperature: 50° C.; Gradient: 0% B, 0-100% B over 3 minutes, then a 0.5-minute hold at 100% B; Flow: 0.5 mL/min; Detection: UV at 220 nm. Retention time: 3.14; M+H=593. Proton NMR was acquired in deuterated DMSO. 1H NMR (500 MHz, DMSO-d6) δ 8.36 (s, 1H), 8.29 (s, 1H), 7.81 (d, J=7.7 Hz, 1H), 7.74 (s, 1H), 7.44 (t, J=7.7 Hz, 1H), 7.32-7.20 (m, 5H), 7.08 (d, J=11.7 Hz, 1H), 4.97 (s, 1H), 4.29-4.15 (m, 2H), 2.72-2.60 (m, 2H), 2.32 (s, 3H), 2.23 (s, 3H), 2.08-2.00 (m, 2H), 1.79 (s, 3H), 0.90 (s, 9H).
Sulfadiazine Quantification and Degradation Analysis
Sulfadiazine degradation product analysis was conducted using UPLC/QTOF (Waters Xevo G2 QTOF, USA) with a chromatographic column (BEH C18, 1.7 μm, 2.1 × 50 mm, Waters ACQUITY UPLC). Accurate MSE mode was used to analyze sulfadiazine and the degradation products with a scan range of 50–650 m/z.
LC-MS/MS Analysis of Secretome Peptides
UPLC Method for Compound Separation
Quantification of Patulin in Samples by HPLC-MS
Elution conditions were as follows: a 1 min isocratic passage of solvent B from 100 to 2%, a 3 min gradient increase of solvent B from 2 to 90%, 1 min isocratic passage of solvent B at 90%, a 1 min gradient decrease of solvent B from 90 to 2 and re-equilibration at 2% solvent B for 4 min.
Electrospray ionization was the ionization source. The parameters were as follows: Source temperature: 120 °C, desolvation temperature: 300 °C, Cone gas: 60 L/h, desolvatation gas flow: 800 L/h. Spectra were acquired in negative ionization selected reaction monitoring (SIR) mode with interchannel delay of 0.050 s.
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