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Rat tail collagen

Manufactured by Roche
Sourced in Sweden, Germany, United Kingdom, Switzerland

Rat tail collagen is a natural-derived biomaterial sourced from the tails of rats. It is a protein-based extracellular matrix component that can be used as a substrate for cell culture and tissue engineering applications.

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19 protocols using rat tail collagen

1

Cell Migration and Proliferation Assay

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The cell migration was measured using 8 μm pore polycarbonate membrane transwell chambers (BD Biosciences, Stockholm, Sweden) coated with 25 μg/ml rat tail collagen (Roche) as described before with some modifications [24 (link)]. Cells were starved in 0.5% DCC-treated FCS in phenol-free DMEM for 48h and then seeded at 25 000 cells/well each transwell chamber and let migrate towards vehicle (DMSO), 2 nM HRG, 10 nM E2 for 24h and/or 20 nM 4-OHT. The non-migrated cells were scraped from the top membrane using a cotton swab and the migrated cells were fixed in 4% para-formaldehyde and stained in 0.1% crystal violet (Sigma Aldrich). The cells were imaged using an Axiovert S100 inverted microscope (Carl Zeiss, Oberkochen, Germany). The migrated cells were counted in five different fields in duplicate wells, in at least three independent experiments and expressed as the mean ± S.E.M.
For proliferation assays, 25 000 cells/ml were let to adhere to the culture plate for 4 h in plain medium and then starved in phenol-free DMEM supplemented with 1% DCC-treated FCS for five days in the presence of vehicle (DMSO), 2 nM HRG, 10 nM E2 for 24h and/or 20 nM 4-OHT. Viable cells were counted using Trypan blue exclusion in at least three independent experiments and expressed as the mean ± S.E.M.
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2

Visualization of Cytoskeletal Remodeling

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hSAECs were incubated in the absence or presence of TGFβ (10 ng/mL) for 15 days, re-plated on glass cover slips pretreated with rat tail collagen (Roche Applied Sciences) and fixed with 4 % paraformaldehyde in PBS. Afterwards, the fixed cells were stained with Alexa Fluor® 568 phalloidin for cytoplasmic distribution of F-actin (shown in red color) and also counterstained with 4’, 6-diamidino-2-phenylindole (DAPI) for nuclear staining (shown in blue color). The cells were visualized with a Nikon fluorescence confocal microscope at a magnification of 63× [5 , 23 (link)].
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3

Purification of Lamellipodia Proteins

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Proteins localized in lamellipodia were purified, as previously described.40, 59 Briefly, cells were plated on 3 μm porous polycarbonate Transwell membrane inserts (Costar) that were coated on the bottom side with 25 μg/mL rat tail collagen (Roche, Inc.). The lower chamber contained medium with 0.5 nM HGF. Cells were allowed to extend their lamellipodia through the pores. Cell bodies remaining on the upper surface were removed and the lamellipodia extending to the lower surface were recovered in lysis buffer.
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4

Isolation of Lamellipodia Proteins

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For proteins localized in the lamellipodia, cells were plated on 3.0 -µm porous polycarbonate Transwell membrane inserts (Costar®) that were coated on the bottom with 25 µg/mL rat tail collagen (11179179001 from Roche®). The lower chamber contained medium with 10% FBS, while the upper chamber was serum free. Cells were allowed to extend their lamellipodia through the pores. Cell bodies remaining on the upper surface were removed by scraping and the lamellipodia extending to the lower surface were recovered in lysis buffer13 (link),59 (link).
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5

In Vitro Wound Healing Assays

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Primary human fibroblasts were a gift from M. Boehm (National Cancer Institute, Bethesda, MD). Primary human keratinocytes were collected and cultured as previously described (69 (link)). Ninety-six–well plate scratch cultures using fibroblasts were coated overnight with rat tail collagen (Roche, Basel, Switzerland) at 4°C. Dendritic cells were cultured and stimulated as previously described (70 (link), 71 (link)). Human epithelial follicle stem cells were purchased from Celprogen (Torrance, CA) and cultured under manufacturer’s recommendations. Epithelial stem cells were stimulated in an identical manner to fibroblast and keratinocyte cultures. Scratch assay for both keratinocytes and fibroblasts were performed as previously described (30 (link)) using a multiplicity of infection of 1 for all experiments.
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6

E10.5 VM Neurosphere and Explant Culture

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E10.5 VM neurospheres and E11.5 VM explants were generated using previously described methods7 (link), 21 (link). Heparin acrylic beads (Sigma), pre-incubated for 24 hrs in either PBS (control) or CHL1 (10μg/ml, R&D Systems), were attached to poly-D-lysine coated coverslips using rat tail collagen (2.1 mg/ml, Roche). The VM tissue (neurosphere or explant) was positioned adjacent to the beads, at a distance of approximately 300μm. Subsequently, both the VM tissue and beads were encapsulated in collagen gel and cultured in the presence of N2 media (consisting of a 1:1 mixture of F12 and MEM supplemented with 15 mM HEPES buffer, 1 mM glutamine, 6 mg/ml glucose, 1 mg/ml bovine serum albumin and N2 supplement) for 72 h, prior to fixation (4% paraformaldehyde, 20 min) and immunostaining.
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7

Immunofluorescence Staining of hSAECs

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hSAECs were plated on coverslips pretreated with rat tail collagen (Roche). After treatment, cells were fixed with 4 % paraformaldehyde in PBS, permeabilized with 0.1% Triton X-100, blocked and incubated with the primary rabbit polyclonal Abs 49 (link), 50 (link). After incubation with Alexa-goat anti-rabbit antibody, cells were washed and mounted using ProLong Diamond Antifade Mountant with DAPI (Molecular Probes). The cells were visualized on a Zeiss fluorescence LSM510 confocal microscope using the 63× objective lens.
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8

TGF-β1 Signaling Modulation Protocol

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Recombinant human TGF-β1 was purchased from R&D Systems (Minneapolis, MN). Prostaglandin E2 (PGE2), anti-COX-2 antibody, COX-2 inhibitor SC-58125, and prostaglandin E2 monoclonal antibody (2B5) were purchased from Cayman Chemicals (Ann Arbor, MI). Lyophilized porcine pancreatic elastase was purchased from Worthington Biochemical Corporation (Lakewood, NJ). CD-45 Dynabeads were purchased from Invitrogen (Carlsbad, CA). OptiPrep was purchased from Sigma-Aldrich (St. Louis, MO). Rat-tail collagen was purchased from Roche (Germany).
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9

Culturing and Differentiating Neuronal Cell Lines

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PC12 cells were cultured as described previously (Greene and Tischler, 1976 (link); Aimé et al., 2015 (link); Aimé et al., 2018 (link)) on plastic cell culture dishes coated with rat tail collagen (Roche). Non-differentiated PC12 cells were grown in RPMI 1640 cell culture medium supplemented with 10% heat inactivated horse serum (Sigma), 5% fetal bovine serum (FBS) and penicillin/streptomycin. For neuronal differentiation, cells were grown in RPMI 1640 cell culture medium supplemented with 1% horse serum, penicillin/streptomycin, and a 100 ng/ml final concentration of human recombinant nerve growth factor (Gemini Bioproducts). Cell culture medium was changed every other day.
HEK293T/17 cells were grown in DMEM supplemented with 10% fetal bovine serum and penicillin/streptomycin.
Ventral midbrain dopaminergic (VM DA) neurons from P0–P3 rats were dissected, dissociated, and plated on a confluent glial monolayer following the protocol kindly provided by Dr. David Sulzer, Columbia University and as described previously (Rayport et al., 1992 (link)).
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10

Fibroblast 3D Collagen Contraction Assay

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Fibroblasts (2.5 x 105 cells/well) were mixed with 4 mg/ml of rat tail collagen (Roche,UK) in DMEM and pH adjusted to 7 using 0.1 mM NaOH (Sigma-Aldrich,UK). The cell:collagen mixture was added to 24 well plates and incubated for 45 min for gel to polymerize. The gels were incubated overnight at 37 0C in serum-free DMEM. The gels were then loosened from the edges of the well by a scalpel and were incubated with serum free medium containing 5 ng/ml of TGF-β1 for 48 h. Collagen lattices were photographed and the surface area for each lattice was calculated using the Image J.
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