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11 protocols using carob galactomannan

1

Glycoside Substrate Characterization

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The 4-nitrophenyl glycoside substrates used in this study (Gal-α-PNP and l-Arap-β-PNP) were purchased from Sigma-Aldrich. The polysaccharides beech wood xylan and Gum Arabic (acacia) were also purchased from Sigma-Aldrich. Xyloglucan (tamarind seed), sugar beet arabinan, barley β-glucan, wheat arabinoxylan, larch arabinogalactan, konjac glucomannan, carob galactomannan and guar bean galactomannan were purchased from Megazyme.
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2

Polysaccharide Extraction and Characterization

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Tamarind xyloglucan, carob galactomannan (high viscosity), beechwood xylan, mixed-linkage (1→3,1→4)-β-glucan (MLG) from oat (high viscosity), barley (high viscosity) and Icelandic moss (‘lichenan’) were purchased from Megazyme (Wicklow, Ireland), and xanthan gum and locust bean gum from Ceratonia siliqua seeds from Sigma-Aldrich (Steinheim, Germany). Arabinogalactan proteins (AGPs) were extracted from young carrots as described by Popper (2011) .
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3

Recombinant Pichia Protein Expression

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EasySelect™ Pichia Expression kit and pPICZα plasmid vectors were acquired from Invitrogen (Waltham, MA, USA). The restriction enzymes ClaI, XbaI, and SacI were purchased from Takara Bio Inc. (Kusatsu, Shiga Prefecture, Japan). Gel extraction and plasmid mini prep kits were both obtained from Macherey–Nagel (Düren, Germany). Beechwood xylan, wheat arabinoxylan, carob galactomannan, konjac glucomannan, barley β-glucan, and xylooligosaccharides (XOS) (DP 2–6) were purchased from Megazyme (Bray, Co. Wicklow, Ireland). Aldotetrauronic (terminal substitution, borohydride reduced) and aldopentauronic acids (internal substitution, borohydride reduced), and β-xylosidase from Bacillus pumilus were a kind gift from Megazyme. Endoglycosidase H was from New England Biolabs (Ipswich, MA, USA).
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4

Phosphoric Acid Swollen Cellulose Preparation

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Phosphoric acid swollen cellulose (PASC) was prepared as follows. 5 g of Avicel® PH-101 was moistened with water and treated with 150 mL ice cold 85% phosphoric acid, stirred on an ice bath for 1 h. Then 500 mL cold acetone was added while stirring. The swollen cellulose was filtered on a glass-filter funnel and washed 3 times with 100 mL ice cold acetone and subsequently twice with 500 mL water. PASC was then suspended in 500 mL water and blended to homogeneity.
High-purity pachyman (β-d-1,3-glucan), barley β-glucan (β-d-1,3-1,4-glucan), lichenan (from Icelandic moss, β-d-1,3-1,4-glucan), mannan (borohydride reduced), konjac glucomannan (β-d-1,4), carob galactomannan, larch arabinogalactan, wheat arabinoxylan, cellotriose, cellotetraose, cellopentaose, cellohexaose, mannobiose, and xylobiose were purchased from Megazyme. Locust bean gum, carboxymethyl cellulose (CMC), beechwood xylan, and cellobiose were purchased from Sigma. 5-bromo-4-chloro-3-indolyl-β-d-cellobioside was purchased from Santa Cruz Biotechnology.
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5

Enzymatic Characterization of TtMan5A

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The substrate specificity of the recombinant TtMan5A was examined using polysaccharides as the substrates, by measuring the liberated reducing sugars as described above, with the exception that the reactions were performed at 50 °C. Carob galactomannan was purchased from Megazyme International (Wicklow, Ireland) and Avicel from Merck KGaA (Darmstadt, Germany). Other substrates used in this study were purchased from Megazyme International, Merck KGaA, and Sigma Chemical Co. as previously described.17) (link)25) (link)
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6

Preparation of Diverse Glycan Stocks

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Acetylated galactoglucomannan (hereafter referred to as β-mannan) was produced in-house from steam-exploded Norway spruce, as described previously [18 (link)]. Mannopentaose, xylopentaose, cellopentaose, konjac glucomannan, carob galactomannan, and arabinogalactan from larch wood were purchased from Megazyme. Alpha-Mannan from Saccharomyces cerevisiae was purchased from Sigma. Acetylated arabinoglucuronoxylan was produced in-house following a protocol described in [19 (link)]. Glycan stocks (10 mg/mL) were prepared using purified H2O and sterilized by filtration using a 0.22-μm syringe filter (Sarstedt AG & Co, Nümbrecht, Germany).
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7

Structural Polysaccharide Extraction and Characterization

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Tamarind xyloglucan, carob galactomannan (high viscosity), beechwood xylan, mixed-linkage (1→3,1→4)-β-glucan (MLG) from oat (high viscosity), barley (high viscosity) and Icelandic moss (‘lichenan’) were purchased from Megazyme (Wicklow, Ireland) and xanthan gum and locust bean gum from Ceratonia siliqua seeds from Sigma-Aldrich (Steinheim, Germany). Arabinogalactan proteins (AGPs) were extracted from young carrots as described by Popper (2011) .
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8

Enzymatic Characterization of Plant Glycosides

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α-l-Arabinofuranosidase (EC 3.2.1.55), exo-β-1,3-galactanase (EC 3.2.1.145), endo-β-1,4-mannanase (EC 3.2.1.78) and α-galactosidase (EC. 3.2.1.22) were purchased from NZYtech (Lisboa, Portugal). β-Galactosidase (EC 3.2.1.23), β-glucuronidase (EC 3.2.1.31), and α-l-rhamnosidase (EC 3.2.1.40) were purchased from Megazime (Wicklow, Ireland). Larch wood arabinogalactan polysaccharide and carob galactomannan were obtained from Megazyme (Wicklow, Ireland). Deionized water was obtained from Millipore cartridge equipment (Bedford, MA). All other solvents and chemicals were obtained from Sigma Aldrich (L’lsle d’Abeau Chesnes, France).
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9

Enzymatic Saccharification of Diverse Biomass

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Carboxymethyl cellulose sodium salt (CMC), Avicel (PH-101), glucose, cellobiose, salicin, locust bean gum mannan and laminarin were purchased from Sigma-Aldrich (St. Louis, MO, USA). Konjac glucomannan (KGM), birchwood xylan, beechwood xylan, lichenan, guar galactomannan, carob galactomannan, larch arabinogalactan and wheat arabinoxylan were purchased from Megazyme (Bray, Co. Wicklow, Ireland). Whatman® filter paper (75 mm × 100 mm) was cut into circle paper units of 0.5 mm × 0.5 mm. Kanamycin and chloramphenicol were purchased from PanReac AppliChem (Ottoweg, Darmstadt, Germany).
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10

Konjac and Carob Polysaccharides Characterization

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Konjac glucomannan and carob galactomannan were purchased from Megazyme International (Wicklow, Ireland).
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