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Cell lysis kit

Manufactured by Bio-Rad
Sourced in United States

The Cell Lysis Kit is a laboratory product designed to facilitate the disruption and extraction of cellular contents, including proteins, nucleic acids, and other biomolecules. This kit provides a standardized and efficient method for cell lysis, enabling researchers to obtain cellular components for various downstream applications.

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33 protocols using cell lysis kit

1

Tissue Homogenization and Protein Extraction

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Tissue were removed and placed in cold (2–4 °C) phosphate buffered saline (PBS) and stored at −80 °C until analysis. Tissue was homogenized as previously described by Hulse et al. [13 (link)].
Briefly, the tissue sample was rinsed with cell wash buffer, taken from the Bio-Plex™ Cell Lysis Kit (catalog #171-304012 Bio-Rad; Hercules, CA) once. Tissue was cut into 3 × 3 mm pieces. 500 mM Phenylmethylsulfonyl Fluoride (PMSF) was prepared by adding 0.436 g PMSF (#P-7626 Sigma, St. Louis, MO, USA) to 5 ml dimethyl sulphoxide (#D2650 Sigma, St. Louis, MO, USA) [DMSO], stored in 0.5 ml aliquots at −20 °C. Lysing solution (10 ml) was prepared by mixing the other contents of the Cell Lysis Kit (#171-304012 Bio-Rad) as per manufacturer’s instructions, vortexed gently and set aside on ice, and 40 μl of 500 mM PMSF was added afterwards. To 500 μl of lysing solution, tissue sample was added, tissue disruption was accomplished by drawing the samples up and down through a 1 ml pipette tip (cut back to a 2 mm opening) 20 times, subsequently centrifuged at 4500g for 15 min at 4 °C, supernatant was collected.
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2

Multiplex Immunoassay for Inflammatory Markers

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For this study, ten HS (H1–H10), ten FCD (F1–F10) and eight controls (C1–C8) were included. Protein was isolated using Cell lysis kit (Bio-rad) and estimated by bicinchoninic acid (BCA) Protein Assay Kit (Pierce, USA). MIA was performed on selected chemokines, cytokines and growth factors (IL1β, IL1Ra, IL6, IL10, CCL3, CCL4, TNFα, and VEGF). The experimental procedure was done using Biorad Bio-plex Pro assays kit as per manufacturer’s protocol. In brief, 50 µl of diluted bead solution and 50 µg of protein were added to each well in triplicate. Plate was incubated for 3 h and washed three times; afterwards, 50 µl of diluted biotin antibody was added to each well and incubated for 1 h. The plate was then washed and 50 µl of diluted streptavidin-PE was added to each well and incubated for 30 min. Finally, the plate was washed again and measured. Measurements and data analysis were performed using the Bio-Plex system in combination with the Bio-Plex Manager software version 4.1 (Bio-Rad Laboratories).
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3

Western Blot Analysis of Inflammatory Markers

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Protein was extracted from 50-mg samples with a cell lysis kit (Bio-Rad Laboratories, Hercules, CA, USA). The samples were incubated in buffer (246 μL lysis buffer, 1.25 μL phosphatase inhibitor, 0.25 μL protease inhibitor, and 2.5 μL PMSF) on ice for 10 min and then centrifuged. For Western blotting, equal amounts of protein supernatant (60 μg) were separated by 10% SDS-PAGE and transferred onto nitrocellulose membranes for immunoblotting. The membranes were blocked with blocking buffer (Li-cor, Lincoln, NE, USA) for 2 h and then incubated with either anti-CKLF-1 (1:100, Peking University Center for Human Disease Genomics, Peking University, Beijing, China), anti-IL-6 (1:500, Abcam, Cambridge, UK), anti-IL-8 (1:500, Abcam), anti-IL-18 (1:500, Abcam), anti-TGF-β (1:500, Abcam), or anti-β-actin (1:2000, Santa Cruz Biotechnology, Dallas, TX, USA) antibodies for 12 h at 4 °C. The membranes were incubated with secondary antibodies (Li-cor, Lincoln, NE) at a 1:10,000 dilution in the dark for 1 h at room temperature and then detected with a double colour infrared laser imaging system (Odyssey, Li-cor, Lincoln, NE, USA).
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4

Cytokine Profiling of Lung Tissue

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The left lung was collected, flash frozen and stored for biochemical analysis. Lung lobes were homogenized with a cell lysis kit (Bio-Rad, Hercules, CA). Total protein concentration was assessed via Lowry protein assay (Bio-Rad). Lung homogenates were diluted 1:50 in 1% BSA (Sigma Aldrich). ELISA’s for IL-1β, IL-5, IL-6, IL-17A, IL-25, and TNF-α were performed using Biolegend ELISA kits (BioLegend, San Diego, CA) according to the manufacturer’s protocol. Cytokine levels (ng/ml) were standardized to total lung protein (mg/ml) and expressed as nanograms of cytokine per milligram of lung tissue (ng/mg).
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5

BIR1 Inhibits BCR-Mediated Signaling

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Example 8

Examination was carried out whether or not BIR1 inhibits phosphorylation of the downstream signal transduction molecule via BCR. With 30 μg/mL of F(ab′)2 of rabbit anti-mouse IgG (H+L) antibody or 45 μg/mL of intact antibody thereof (manufactured by Zymed), 6×106 cells which stably express FcR chimeric protein suspended in Ca2+-containing HEPES/Hanks' buffer were stimulated at 37° C. for 3 minutes. A cell lysate (500 ng/μl) was prepared using a lysing solution (Cell Lysis Kit; manufactured by BIO-RAD). Phosphorylation of each signal transduction molecule was determined using Bio-Plex Phospho 7-Plex Assay (manufactured by BIO-RAD).

As a result, as shown in FIG. 7, BIR1 chimeric protein inhibited BCR-mediated phosphorylation of Erk2 when the BIR1 chimeric protein was crosslinked with BCR by the addition of the intact antibody, similar to the case of KIR2DL3. On the other hand, the mutant in which intracellular tyrosine residue of BIR1 was replaced by phenylalanine residue did not inhibit phosphorylation of Erk2.

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6

Protein Extraction and Western Blot Analysis

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Samples of 50 mg were weighed, and the Cell lysis kit (Bio-Rad, Hercules, CA) was then employed as a means of extracting protein on ice with fresh protease and phosphatase inhibitors, as well as freshly added Phenylmethylsulfonyl fluoride. Following lysis and centrifugation, equivalent quantities of protein were run on 10% sodium dodecyl sulfate-polyacrylamide gel electrophoresis gels and transferred onto nitrocellulose membranes. Blocking buffer (Li-cor, Lincoln, NE) was used to block these membranes that were then stained using primary anti-IL-12p40 (1:500, Abcam), anti-MIP-1β (1:500, Abcam), anti-PDGF-BB (1:500, Abcam), anti-IL-1Ra (1:500, Abcam,), or anti-b-actin (1:2000, Santa Cruz Biotechnology, Dallas, TX) antibody for 12 hours at 4°C. A secondary antibody (Li-cor) diluted 1:10,000 was then used, followed by color detection via infrared laser imaging system (Odyssey, Li-cor).
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7

Tissue Homogenization and Protein Extraction

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Spleen, lung, liver, and tumor were excised 1 day after treatment and homogenized in the Cell Lysis Kit (Bio-Rad Laboratories) with the FastPrep-24 5G Homogenizer. The samples were centrifuged for 10 min at 13,000g, and the supernatant was collected.
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8

Superoxide Production in Placenta and Renal Cortex

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Superoxide production in the placenta and renal cortex were measured using the lucigenin technique, as previously described by our lab (Shields et al. 2018). Briefly, rat placentas and 1 g of renal cortexes from NP and NP+IL‐17 rats were snap frozen in liquid nitrogen immediately after collection and stored at −80°C until further processing. Tissue samples were homogenized using the Bio‐Rad Cell Lysis Kit (Bio‐Rad, Hercules, CA) according to the manufacturer's instructions. The tissue lysate was incubated with lucigenin at a concentration of 5 μmol/L. The samples were allowed to equilibrate for 15 min in the dark, and the luminescence was measured for 10 sec with a BioTek Plate Reader (BioTek, Winooski, VT). Luminescence was recorded as relative light units per minute (RLUs/min). An assay blank containing lucigenin with no homogenate was subtracted from the reading before transformation of the data. Each sample was read three times and the average was used for data transformation. The protein concentration was measured using a protein assay with BSA standards (Pierce, 169 Rockford, IL) and the data are expressed as RLU/min/mg protein.
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9

Cytokine Profiling of Lung Homogenates

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The right lung middle lobe was homogenized with a cell lysis kit (Bio‐Rad, Hercules, CA). Total protein concentration was assessed via Lowry protein assay (Bio‐Rad). Lung homogenates were diluted at various concentrations: 1:50, 1:100, 1:200 in 1% BSA (Sigma Aldrich) for ELISA. CCL5, CXCL1, IL‐5, IL‐6, IL‐17A, IL‐25, IL‐33, and TNF‐α protein levels were measured using Biolegend or R&D Systems (Minneapolis, MN) ELISA kits according to the manufacturer's protocol. Protein levels were standardized to total lung protein.
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10

Analyzing Cellular Phosphoprotein Levels

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Phosphorylated proteins (Phosph-ERK1/2 (T202/Y204, T185/Y187); No. 5016616, Phospho-Akt (S473); No. 5017459, Phospho-p38 MAPK (T189/Y182); No. 5017183, and Bio-Plex® Phosphoprotein Detection Reagent Kit; No. 310013270, all from Bio-Rad, Germany) were analyzed with the Bio-Plex 200 Array System with Bio-Plex™ Manager 4.1.1. software (Bio-Rad, Germany) according to the manufacturer's recommendations. Total protein lysates (10 μg soluble protein) were prepared with cell lysis kit from Bio-Rad, Germany. Protein lysates were incubated overnight in 96-well plates with fluorescent capturing beads. Then, plates were washed and incubated with biotinylated antibodies against the phosphorylated proteins and final added streptavidin-phycoerythrin solution. The measurement of phosphorylated proteins was performed with the relative mean fluorescence intensity calculated excluding the blank (approach without protein lysates) (n = 3).
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