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24 protocols using maraviroc

1

Quantifying HIV-1 Transcripts in Macrophages

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MDM were infected as described above in the presence or absence of 5 µM Raltegravir. 24 h p.i. 5 µM Maraviroc (Sigma Aldrich) was added to the medium. At 72 h p.i. medium was replaced by fresh medium with 5 µM Maraviroc (Sigma Aldrich) and 5 µM Ral, if needed. 96 hr after infection, medium was removed, and cells were washed twice with PBS before lysis. RNA was extracted using InviTrap Spin Universal RNA Mini Kit (Stratec Biomedical, Birkenfeld, Germany) following manufacturer´s instructions. cDNA synthesis was performed with the SuperScript III Reverse Transcriptase kit (Thermo Fischer Scientific) following manufacturer´s instructions, using 100 ng of RNA. cDNA was used as a template for detecting HIV-1 transcripts with TaqMan quantitative PCR. PCR conditions were as follows: 1X iQ Supermix (BioRad, Hercules, USA), 900 nM primers and 200 nM probe. Cycling conditions were: 98°C for 3 min, 44 cycles of 98°C for 10 s and 60°C for 40 s, followed by 60 cycles with a ramp rate of 0.5°C/cycle for 5 s each starting at 65°C. Primers for detection of gag transcripts used were: Forward, 5´ ACATCAAGCAGCCATGCAAAA 3´, Reverse, 5´ TGGATGCAATCTATCCCATTCTG 3´, Probe, 5´-FAM- AAGAGACCATCAATGAGGAA-TAMRA 3´. Primers and probe binding to eukaryotic 18S rRNA (VIC/MGB, Thermo Fisher 4319413E) were used in parallel as endogenous control for normalization.
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2

Maraviroc and Mouse Chemokine Analyses

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Maraviroc was obtained from Sigma-Aldrich (St. Louis, MO, USA) (for in vitro experiments) or GlaxoSmithKline (Brentford, UK) (for in vivo experiments). Mouse CCL3 was obtained from Peprotech (Rocky Hill, NJ, USA). The following antibodies were used as the primary antibodies for immunohistochemical analyses: goat anti-CCR5 antibody (Santa Cruz Biotechnology, Dallas, TX, USA), rat anti-Ly6G antibody (BD Biosciences, San Jose, CA, USA), rat anti-F4/80 antibody (Serotec, Kidlington, UK), mouse anti-α-SMA antibody (Dako, Glostrup, Denmark), rabbit anti-type I collagen antibody, rabbit anti-CD31 antibody and rabbit anti-EGF antibody (Abcam, Cambridge, UK). The following rat anti-mouse antibodies were used as the primary antibodies for the flow cytometric analysis: anti-CD11b antibody (BD Biosciences), anti-CD25 antibody (BioLegend, San Diego, CA, USA), anti-CD45 antibody (eBioscience, San Diego, CA, USA), anti-F4/80 antibody (eBioscience), anti-Foxp3 antibody (eBioscience), anti-Ly6G antibody (Gr-1) (Tonbo Biosciences, San Diego, CA, USA), anti-MIP-1α antibody (R&D Systems, Minneapolis, MN, USA), anti-CCR5 antibody (BioLegend), and isotype-matched control IgGs for individual rat antibodies (BD Biosciences).
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3

Cholangiocarcinoma Cell Migration Assay

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The cholangiocarcinoma cells (105–5 × 105 cells) were added into the upper chamber with 100 µl serum free medium, MSC-CM and MSC(TI)-CM alone or combined with Maraviroc (Sigma Chemical Co, MO,USA) (20 µM), MK-2206 (Selleck Chemicals, TX, USA) (10 µM), anti-CCL5 antibody (PeproTech, NJ, USA) (0.5 µg/ml) or PDTC (Selleck Chemicals, TX, USA) (10 µM) were added into the lower chamber (containing 10% FBS). 24 hours later, remove the cell which were not migrated to the the reverse side of the filters and washed with PBS. Then 4% paraformaldehyde fixed the migration cells for 10 minutes, stained with crystal violet staining, and counted in five non-overlapping fields under a bright-field microscopy (IX51, Olympus Corporation, JPN) at 100 magnification.
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4

Chemokine Receptor Inhibition Assay

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In some experiments, the following inhibitors were used: 500 ng/ml Pertussis toxin from Bordetella pertussis (PTX) or inactive mutated version (m-PTX) (Sigma Aldrich, St Louis, MO, USA); 10 μg/ml Maraviroc (CCR5 antagonist) (Sigma Aldrich); 1 μM Cenicriviroc (CCR2 + CCR5 dual inhibitor) (AdooQ Bioscience, Irvine, CA, USA); 1 μM CCR2 antagonist (CAS 445479-97-0, Santa Cruz Biotechnology Inc, Dallas, TX, USA); 50 μM UCB35625 (CCR1 + CCR3 dual inhibitor) (R & D Systems); or DMSO (vehicle).
In some experiments, the following neutralising antibodies were used: anti-CCL1, anti-CCL3, anti-CCL4, anti-CCL5, anti-CCL9, and anti-XCL1 with corresponding isotype control antibodies (all from R & D Systems).
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5

Rantes-PE Binding Assay for CCR5 Expression

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First, Rantes-PE was prepared by incubating avidin-PE (Invitrogen, Carlsbad, CA, USA) and biotin-Rantes (Chemotactics) for 3 min at RT. Following this, 1 × 105 cells suspension was incubated with 2U/1 × 105 cells of Heparinise I and III (2U/106 cells, Sigma-Aldrich) for 1 h at 4 °C. Then, cells were washed and incubated with eNAMPT (125 µg/mL; 2.25 µM) or maraviroc (10 µM, Sigma Aldrich) at 4 °C in complete medium (200 µL). After 20 min, Rantes-PE (25 ng; 16 nM) was added to the cell suspension for 2 h at 4 °C. Then, cells were washed three times in ice cold PBS, resuspended in FACS Buffer (Hanks’ Balanced Salt solution HBSS + 0.5% BSA), and samples were analyzed by flow cytometry (BD Accuri C6). eNAMPT was used at this high concentration considering both the molecular weight and the oligomerization state of the proteins, to take into account the reported difference in affinity to CCR5 (0.4 nM for RANTES vs. 5 µM for eNAMPT [12 (link),22 (link)]. In preliminary experiments, lower concentrations of eNAMPT were devoid of effect.
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6

Cytotoxic NK Cell Assay

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A total of 2.0 × 104 B16-F10 cells were plated 1 day before the assay on a 48-well plate. NK cells were purified by the NK Cell Isolation Kit (Miltenyi Biotec) and stimulated with 200 U/ml rmIL-2 (402-ML, R&D Systems) for 24 h. Same numbers (2.0 × 104) of activated NK cells were cocultured with B16-F10 cells for 4 h. In order to inhibit CCL5–CCR5 interaction, 0.5 µg/ml of Maraviroc (PZ0002, Sigma-Aldrich), 0.5 µg/ml of TAK779 (SML0911, Sigma-Aldrich) or 0.5 µg/ml anti-mCCL5 (MAB478-100, R&D Systems) antibody were added together with NK cells.
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7

Visualizing CCR5 Expression in Liver Cells

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Cells were cultured in 48-well plates overnight, washed with PBS, and placed in serum-free media for 12 h at 37 °C in a humid atmosphere of 5% CO2. Next, cells were treated with CCL5 (100 ng/mL) (Biolegend, San Diego, CA, USA) recombinant protein for 30 min. For each of the three liver cell lines, maraviroc (200 ng/mL, Sigma Aldrich, St. Louis, MO, USA), was added to block the activity of CCL5. Further, cells were washed, fixed with 4% paraformaldehyde, and permeabilized by saponin (Fisher Scientific, Pittsburg, PA, USA) for 10 min at 4 °C. Cells were washed with PBS, blocked with 3% bovine serum albumin (Sigma Aldrich, St. Louis, MO, USA) for 1 h, and then stained with FITC-conjugated anti-CCR5 antibody (Biolegend, San Diego, CA, USA) overnight at 4 °C. F-Actin filaments were stained with Phalloidin Red 594 solution (1:40) (Biolegend, San Diego, CA, USA) for 20 min at room temperature. Lastly, nuclei were counterstained with DAPI (Invitrogen, Carlsbad, CA, USA), and images were captured at 40× using a fluorescent microscope (EVOS FL microscope; Thermo Scientific, USA).
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8

Lipid Membrane Fusion Dynamics

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Most lipids and fluorescent probes were from Avanti Polar Lipids, and DiO, DiI, DiD, and octadecyl rhodamine B chloride (R18) were from Invitrogen. MβCD, NEM, and fluorescein isothiocyanate–, Alexa 647–, or Alexa 555–labeled CTxB were purchased from Sigma-Aldrich. Formaldehyde and DTT were purchased from Avantor and RPI, respectively. Alexa 488–labeled CD4 antibody and Alexa 647–labeled CCR5 antibody were purchased from Novus Biologicals. HIV entry inhibitors (maraviroc and enfuvirtide), SCDase, and PLA2 were purchased from Sigma-Aldrich. HIV fusion peptide was custom-synthesized by the Yale W.M. Keck Biotechnology Resource Laboratory.
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9

Quantifying HIV-1 Infection Efficiency

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The titer of individual virus stocks was determined on SupT1 cells using the virus-encoded GFP signals measured by flow cytometry as readout for productive infection. Resting CD4 T cells were infected with virus stocks at different multiplicities of infection (MOIs) as indicated for each experiment. After 3 days, cells were washed twice with PBS and fixed with 4% PFA for 1.5 h. Cells were then washed and resuspended in FACS buffer. The percentage of GFP-positive cells was quantified by flow cytometry. Drug or antibody controls were added to cells 30 min prior to HIV-1 challenge. The following drugs were used: Efavirenz (EFV) (stock: 10 mM; Sigma Aldrich), AMD3100 (stock: 16 μg/mL; Sigma Aldrich), Anti-CD4 clone SK3 (stock: 25 μg/mL; Biolegend), T20 (stock: 90 mg/ml; Enfuvirtid; Roche), and Maraviroc (10 μg/μL; Sigma Aldrich).
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10

Modulation of Cell Signaling Pathways

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B×471 and maraviroc (Sigma-Aldrich, 10 µM and 5 µM, respectively) were added to the culture on day 0 and 3. 4PD20 (link) (Kerafast) was complexed with short hairpin RNAs (shRNAs) (online supplemental table 1) at a 10:1 N/P-ratio following manufacturer instructions.
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