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5 protocols using ba f3

1

Cell Line Cultivation Protocols

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The CML-derived cell line K562 and murine pro-B cell line Ba/F3 were purchased from the Riken Cell Bank (Ibaraki, Japan). K562 cells were cultured in RPMI 1640 (Nacalai Tesque) supplemented with 10% fetal bovine serum (FBS) (Biowest, Nuaillé, France), 100 units/mL penicillin (Nacalai Tesque), and 100 μg/mL streptomycin (Nacalai Tesque). Ba/F3 cells were cultured in RPMI 1640 supplemented with 10% FBS, 100 units/mL penicillin, 100 μg/mL streptomycin, and IL-3 (2 ng/mL).
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Cell Lines for NPM-ALK and TEL-JAK2 Studies

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The IL-3-dependent hematopoietic cell line Ba/F3 was purchased from Riken Cell Bank (Ibaraki, Japan). SUDHL-1 and Ki-JK cells, derived from NPM-ALK-positive ALCL patients, were purchased from Summit Pharmaceuticals International (Tokyo, Japan) and JCRB cell Bank (Osaka, Japan), respectively. SUDHL-1 cells and Ki-JK cells were cultured in RPMI 1640 medium supplemented with 10% FBS (BioWest), 100 units/ml penicillin (Nacalai Tesque), and 100 μg/ml streptomycin (Nacalai Tesque) with or without IL-3 (2 ng/mL) at 37°C and 5% CO2. Ba/F3 cells were infected with an empty virus (-) and retroviruses expressing NPM-ALK, its kinase dead mutant (K210R), and TEL-JAK2 using RetroNectin according to the manufacturer’s instructions (Takara Bio Inc., Shiga, Japan). These cells were cultured in RPMI-1640 medium (Nacalai Tesque, Tokyo, Japan) supplemented with 10% fetal bovine serum (FBS) (BioWest, Nuaillé, France), 100 units/ml penicillin (Nacalai Tesque), 100 μg/ml streptomycin (Nacalai Tesque), 2 ng/mL IL-3 (PEPROTECH), and 5 μg/mL puromycin (InVivoGen).
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Cell Line Generation and Transduction

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The CML-derived cell line K562 and murine pro-B cell line Ba/F3 were purchased from the Riken Cell Bank (Ibaraki, Japan). Ba/F3 cells expressing p190BCR-ABL and its point mutant (T315I) were established as previously described [41 (link)]. K562 cells and transduced Ba/F3 cells were cultured in RPMI 1640 (Nacalai Tesque, Kyoto, Japan) supplemented with 10% fetal bovine serum (Biowest, Nuaillé, France), 100 units/mL penicillin (Nacalai Tesque), and 100 μg/mL streptomycin (Nacalai Tesque). K562 cells were infected with an empty virus and a retrovirus to express BRAF (V600E) using RetroNectin (Takara Bio Inc., Shiga, Japan), and infected K562 cells were selected using culture media supplemented with 2 μg/mL puromycin (InvivoGen, San Diego, CA, USA).
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Mouse Cell Lines and Transfection for Galectin-3 Study

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Cell lines, including Ba/F3 (murine pro-B cell; RCB0805) and OP9 (murine osteoblast; RCB1124) were purchased from the Riken cell bank (Tsukuba, Japan). Ba/F3 cells were cultured in RPMI-1640 medium (Sigma) supplemented with 10% fetal bovine serum (FBS; Sigma) and 1% penicillin/streptomycin (Gibco, St. Paul, Brazil) and 0.3 ng/ml IL-3 (Invitrogen, Carlsbad, CA). OP9 cells were cultured in Dulbecco’s modified Eagle’s medium (DMEM; Sigma) supplemented with 20% FBS, 1% penicillin/streptomycin, and 2 mmol/l L-glutamine (Gibco). Purified LT-HSCs were short-term cultured in RPMI-1640 medium supplemented with 1% FBS, 50 ng/ml mouse stem-cell factor (SCF; PeproTech, Rocky Hill, NJ), and 0.3 ng/ml IL-3 at 37 °C in a humidified atmosphere containing 5% CO2 for 12 h. Ba/F3 cells were transfected with pCMV-mGal-3-IRES2-EGFP containing mouse Gal-3 or with mock vector as a control. Ba/F3 cells were stably transfected using the Lipofectamine 3000 system (Invitrogen) according to the manufacturer’s instructions and selected by antibiotic resistance to G418 (Gibco).
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5

Murine IL-3-Dependent Pro-B Cell Line Culture

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A murine IL-3-dependent pro-B cell line, Ba/F3 (RCB0805, RIKEN Cell Bank, Tsukuba, Japan), was cultured in RPMI 1640 medium (Nissui Pharmaceutical, Tokyo, Japan) supplemented with 10% foetal bovine serum (FBS; Biowest, Paris, France) and 1 ng/ml murine IL-3 (R&D Systems, Cambridge, MA, USA). A retroviral packaging cell line, Plat-E52 (link), was cultured in Dulbecco's modified Eagle's medium (Nissui Pharmaceutical) supplemented with 10% FBS, 1 μg/ml puromycin (Sigma, St Louis, MO, USA) and 10 μg/ml blasticidin (Kaken Pharmaceutical, Tokyo, Japan).
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