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Roswell park memorial institute (rpmi)

Manufactured by US Biological
Sourced in United States

RPMI is a powdered cell culture medium that provides nutrients and a buffering system to support the growth and maintenance of various cell types, such as human and animal cells, in an in vitro environment. It is designed to maintain physiological pH and osmolarity, and it contains a balanced mixture of amino acids, vitamins, and other essential components required for cellular growth and proliferation.

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6 protocols using roswell park memorial institute (rpmi)

1

HeLa and HEK293FT Cell Culture Protocols

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HeLa M cells (provided by P. De Camilli, Yale University, New Haven, CT) and HEK293FT cells (Thermo Fisher Scientific) were grown in DMEM (high glucose, with l-glutamine), 10% FBS, and 1% penicillin/streptomycin supplement (all from Invitrogen). Where indicated, cells were starved by incubation in amino acid–free RPMI (US Biological) for 2 h. Amino acid refeeding was achieved by adding 1× MEM amino acid supplement (Invitrogen) into RPMI. Plasmid transfections were performed with 0.1 µg plasmid DNA, 0.3 µl Fugene 6 transfection reagent (Promega), and 20 µl Opti-MEM (Invitrogen) that was added to 500 µl media containing 20,000 cells per well in 24-well plates. siRNA transfections were performed with 7.5 µl 20 µM siRNA, 5 µl RNAiMAX transfection reagent (Invitrogen), and 500 µl Opti-MEM (Invitrogen) that was added to 2 ml media containing 120,000 cells per well in six-well plates. Experiments were performed 2 d after transfections. For transfection of larger dishes, the volumes of reagents and the number of cells were increased proportionally to surface area of the dish. Control siRNA was purchased from Integrated DNA Technologies (5′-CGUUAAUCGCGUAUAAUACGCGUAT-3′), and RagC siRNA was purchased from GE Healthcare (5′-GCAAUUAUCAAGCUGAAUA-3′).
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2

Modulation of mTORC1 in Naive B Cells

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To study mTORC1 activity in naïve B cells, we isolated CD43- resting B cells from 8-10 week-old non-immunized mice using magnetic beads, (Myltenyi, #130-049-801) following manufacturer instructions. 1x106 cells CD43- resting B cells were plated with B cell media (RPMI (US Biological #R8999-04A) +10% dialyzed FBS +55μM β-mercaptoethanol (Gibco, #31350-010) + 10mM HEPES (Lonza #BE17-737E) +100μg/mL penicillin/streptomycin (Gibco, #15070-063) containing no amino acids with or without cytokines (1μg/mL anti-CD40, (R&D Systems, #MAB440) and 25ng/mL mouse Interleukin-4 (R&D Systems, #404-ML)) during 1h. After this time, stimulation with amino acids was performed for 30min and cells where harvested and processed for flow cytometry.
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3

Primary Culture of Fetal Calf Kidney Cells

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The early-passage of a fetal calve kidney (FCK) primary cell culture, established by Experimental Therapy Department, ICCMGR/ Mustansiriyah University, from a normal FCK, was minced and treated with an enzyme (0.02% trypsin with phosphate-buffered saline (PBS) for 20 min at 37 °C, and then filtered through an 80 um mesh. The filtered fluids were then centrifuged, and the precipitated cells were cultured in a tissue culture flask overnight in Roswell Park Memorial Institute medium (RPMI) (USbiological, Salem, MA, USA) supplemented with 10% fetal bovine serum (FBS) (Capricorn-Scientific GmbH, Ebsdorfergrund, Germany), ampicillin (100 µg /ml), and streptomycin (100 µg/ml) (Capricorn-Scientific GmbH, Ebsdorfergrund, Germany). The human cervix carcinoma (Hela cell line) and human rhabdomyosarcoma (RD) cell line were supplied by the same company and maintained in RPMI medium supplemented with 10% FBS (Capricorn Scientific GmbH), ampicillin (100 µg /ml), and streptomycin (100 µg/ml) (Capricorn Scientific GmbH).
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4

Live-cell Imaging of Vesicle Dynamics

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Cells were seeded in Matrigel-coated 35-mm glass-bottom dishes and transiently transfected with indicated GFP- or mCh/mRFP-fusion proteins using Lipofectamine 2000. At indicated times after transfection, cells in riboflavin-free RPMI (US Biological) containing 10% FBS were imaged on a Axiovert 200 microscope (ZEISS) equipped with a 63X Plan-Apo objective lens (NA 1.4), an UltraVIEW ERS6 spinning-disk confocal scan head (PerkinElmer), an environmental chamber at 37°C, an Orca ER CCD camera (Hamamatsu Photonics) and Volocity (PerkinElmer) software for image acquisition. In some experiments, an ORCA-Flash4.0 sCMOS camera was used instead. For imaging of cells expressing GFP-VAMP7 relative to melanosomes imaged by BF microscopy (Fig. 5, a–c; and Fig. S2 i), we used an Olympus IX71 spinning-disk confocal microscope equipped with a 100× Plan-Apo objective (NA 1.4), LCI Chamlide stagetop incubation chamber at 37°C/5% CO2, an ImageEM EM-CCD camera (Hamamatsu Photonics), and MetaMorph (Molecular Devices) software for image acquisition. Image sequences were further analyzed using ImageJ. All images were captured at ∼1 frames per second (fps) except for Video 9, which was captured at ∼1.4 fps.
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5

Cellular Response to Serum Deprivation

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After being washed twice with phosphate-buffered saline (PBS), 1 × 106 J-Lat A1 cells or U1 cells were cultured in a 12-well plate in RPMI (US Biological, Salem, MA) with serum (Invitrogen), without serum, or without amino acids for 24 h to 72 h. Cells were collected for either flow cytometry or RNA extraction. Also, 10 μM GCN2 kinase inhibitor SP600125 or 1 mM amino acid was added to the J-Lat A1 or U1 cell cultures at low levels of serum.
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6

Amino Acid Starvation and Regulation of TFEB

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For experiments involving amino acid starvation, cell culture plates were rinsed twice with PBS and incubated in amino acid-free RPMI (Cat# R9010-01, USBiological) supplemented with 10% dialyzed FBS for 60 min. Where indicated, cells were restimulated for 30 min with 1× water-solubilized mix of essential (Cat#11130036, Thermo Fisher Scientific) and non-essential (Cat# 11140035, Thermo Fisher Scientific) amino acids resuspended in amino acid-free RPMI. Where reported, cells were incubated with 5 nM Leptomycin B or 250 nM Torin 1 during amino acid restimulation. For evaluation of TFEB nuclear phosphorylation, Leptomycin B (5 nM) was also used during starvation as a pretreatment to maximize TFEB nuclear retention.
For siRNA-based experiments, cells were transfected using Lipofectamine® RNAiMAX Transfection Reagent (#13778, Invitrogen) with the indicated siRNAs and analyzed after 72 h.
The following siRNA were used:
siCRM1: #1 CUAUGAGGAAUGUCGCAGA;
#2 GGAUAUCAACUUAUUAGAU;
#3 CCAAUAUUCGACUUGCGUA
Control non-targeting siRNA Pool (D-001810-10-05) were from Dharmacon.
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