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9 protocols using ab2462

1

Protein Expression Analysis in Lung Cancer

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The lysates from A549 and HCC827 cells were collected by RIPA buffer. After that, a total of 20 μg of protein was transferred onto PVDF membrane, followed by incubation with anti-MMP2 (1/5000 dilution, #ab2462, Abcam), anti-MMP9 (1/2000 dilution, #ab76003, Abcam), anti-fibronectin 1 (1/8000 dilution, #ab23750, Abcam), and anti-GAPDH (1/10000 dilution, #ab181602, Abcam) at 4 °C overnight. The next day, the membrane was washed strictly and probed with secondary antibody and visualized. IHC was performed in tissue microarrays (TMA) containing 58 LUAD tissue samples using anti-fibronectin 1 (1/500 dilution, #ab23750, Abcam).
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2

Protein Expression Analysis of Cancer Markers

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The total proteins were isolated by using lysis buffer containing a protease inhibitor cocktail (P8340; Sigma). The protein concentration in each sample was evaluated by using a BCA protein assay kit (Thermo Fisher Scientific, Waltham, MA, USA). A 30 µg sample of total protein from each sample was separated by 10% SDS-PAGE, and the separated protein bands were transferred onto polyvinylidene fluoride (PVDF) membranes (Millipore, Bedford, MA, USA), which were then blocked with skimmed milk (5%) for 2 hrs at room temperature. Next, the membranes were incubated overnight at 4 °C with primary antibodies, followed by incubation with the secondary antibodies (HRP linked, Abcam, Cambridge, UK, ab205718, 1:2,000) at room temperature for 2 hrs. The blots were exposed by using ECL detection reagent (EMD Millipore) and analyzed by using ImageJ version 1.48 software (National Institutes of Health, Bethesda, MD, USA). The primary antibodies used in this study were anti-E-cadherin (Abcam, ab76319, 1:1,000), anti-MMP2 (Abcam, ab2462, 1:1,000), anti-MMP9 (Abcam, ab228402, 1:1,000), anti-N-cadherin (Abcam, ab76057, 1:1,000), anti-Bax (Abcam, ab53154, 1:1,000), anti-Caspase-3 (Abcam, ab214430, 1:1,000), and anti-GAPDH (Abcam, ab9485, 1:2,000).
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3

Protein Extraction and Western Blot Analysis

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Total protein was extracted from LX-2 cells using radioimmunoprecipitation assay (RIPA) lysis buffer (Sigma-Aldrich). Nuclear and cytoplasm proteins were fractionated using a NE-PER kit (Thermo Fisher Scientific). The protein concentration was quantified by a bicinchoninic acid protein assay kit (Thermo Fisher Scientific). 25 μg of protein was loaded on 10% sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) gel, transferred to a polyvinylidene fluoride (PVDF) membrane (Millipore), and the protein of interest was probed with primary antibodies at 4°C overnight, followed by secondary antibodies (Beyotime Biotechnology, A0208 and A0216) for 1 h at 25°C. The following antibodies were used: anti-TRIM37 (Cell Signaling Technology, 96167), anti-MMP-2 (Abcam; ab2462), anti-α-SMA (Abcam; ab5694), anti-SMAD7 (Abcam, ab90086), anti-NF-κB p65 (Abcam, ab16502), anti-H3 (Abcam, ab1791), and anti-GAPDH (Cell Signaling Technology, 5174). The binding of the secondary antibodies was visualized by an enhanced chemiluminescence (ECL) system (GE Healthcare/Amersham Biosciences).
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4

Quantifying Protein Expression with Western Blot

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The expression of proteins was detected using Western blot as previously described.15 (link) The primary antibodies used in the study were HOXB2 (ab136856) and MMP-2 (ab2462)(abcam, USA). β-actin (A8418) (Sigma, USA) was used as an internal control.
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5

Immunohistochemical Analysis of Brain Proteins

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At 3 months, rats in all groups (n = 6 rats per group) were anesthetized by intraperitoneal as previous mentioned. Rats were sacrificed and perfused with phosphate‐buffered saline followed by perfusion with 4% paraformaldehyde dissolved in PBS. Then, the brain was removed and fixed in 4% paraformaldehyde for 24 h. Immunohistochemistry (IHC) was performed as previously described.28 The primary antibodies for against the following proteins were used: P‐EGFR (Cell Signaling, 3777), MMP‐2 (Abcam, ab2462), and MMP‐9 (Abcam, ab86657), α‐SMA (Abcam, ab5694). All slides were observed at 20× or 40×, and all images were acquired using an Olympus DP80 microscope.
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6

Immunofluorescence Staining of Rat Brain

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After rat brain was fixed in paraformaldehyde, the paraffin section was made as previously described.25 Then, the paraffin section was baked for 15 min. Treat the sections with xylene and alcohol. Antigen retrieval: use citrate buffer solution (pH 6.0) repair sections for 10 min with high pressure, then natural cooling to room temperature. Wash sections by PBS for 3 times × 5 min. Transmembrane by heat: penetrate section by 3% TritionX‐100 for 30 min and wash section by PBS for 3 times for 5 min. Block section by 3% BSA for 30 min. Wash section by PBS for 3 times × 5 min. Incubate with primary antibody: dilute the primary antibody by antibody diluent and incubated overnight at 4°C. Wash section by PBS for 3 times × 5 min. Incubate with fluorescent second antibody: dilute antibody by PBS at 1:300 and incubate at 37°C for 30 min in dark. Wash section by PBS for 3 times × 5 min. Stain section by DAPI at room temperature for 2 min in dark. Wash section by PBS for 3 times × 5 min. Seal section by glycerol. Photographs were taken using Olympus DP80 fluorescence microscope. The primary antibodies for the following proteins were used: p‐EGFR (Cell Signaling, 3777), MMP‐2 (Abcam, ab2462), α‐SMA (Abcam, ab5694), and TNF‐α (Proteintech, 17590‐1‐AP). The fluorescent second antibodies (Invitrogen, A21206 and A21203) were used.
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7

Western Blot Analysis of Protein Expression

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Proteins were extracted using RIPA lysis (Beyotime, Jiangsu, China) buffer and were collected. Then, protein concentration was determined using a BCA assay kit (Thermo Scientific, Waltham, MA, USA). The protein samples were separated by using sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and electrophoretically transferred onto polyvinylidene fluoride (PVDF, EMD Millipore, Billerica, MA, USA) membranes. Membranes were blocked with 5% skim milk for 1 hour and then incubated with primary antibodies against CDK4 (ab199728, 1 : 2000, Abcam), Cyclin D1 (ab226977, 1 : 500, Abcam), p53 (ab131442, 1 : 1000, Abcam), p21 (ab7960, 1 : 2000, Abcam), MMP2 (ab2462, 1 : 5000, Abcam), MMP9 (ab76003, 1 : 2000, Abcam), E-cadherin (ab18203, 1 : 1000, Abcam), N-cadherin (ab18203, 1 : 1000, Abcam), cleaved caspase-3 (ab2302,1 : 1000, Abcam), cleaved PARP (ab32064, 1 : 1000, Abcam), Bcl-2 (ab32124, 1 : 1000, Abcam), Bax (ab7977, 1 : 1000, Abcam), CD86 (ab7977, 1 : 1000, Abcam), CD206 (ab7977, 1 : 1000, Abcam), iNOS (ab7977, 1 : 1000, Abcam), Arg-1 (ab7977, 1 : 1000, Abcam), and GAPDH (ab8245, 1 : 1000, Abcam) at 4°C for overnight. Subsequently, the membranes were probed with horseradish peroxidase- (HRP-) conjugated secondary antibodies (Abcam) at room temperature for 1 hour. The band was visualized using an enhanced chemiluminescence technique (Thermo Fisher Scientific).
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8

Immunohistochemical Analysis of MMPs and Macrophages

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SP method was used for immunohistochemistry according to the manufacture’s protocol. After incubation with 1% H2O2 in methanol and 10% goat serum for 30 min, the primary antibodies to MMP2 (ab2462, Abcam, Hong Kong, China), MMP9 (ab58803, Abcam, Hongkong, China), and monoclonal mouse anti-rabbit macrophage (Clone RAM11, Dako, Denmark) were incubated overnight at 4 °C. Sections were incubated with biotinylated anti-mouse second antibody for 20 min, and visualized with diaminobenzidine tetrahydrochloride. Immunofluorescence was used to detect the assembly of smooth muscle cells (SMCs). Sections were incubated overnight with mouse monoclonal anti-alpha-smooth muscle actin (A2547, Sigma-Aldrich (Shanghai) Trading Co., Ltd, China), and subsequently incubated with horseradish peroxidase-conjugated goat anti-mouse IgG. Semiquantitative analyses for SMCs content was calculated as the mean area of 6 fields per rabbit.
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9

Immunohistochemical Analysis of MMP and TIMP

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Specimens were deparaffinized and rehydrated by successively passing through xylene and ethanol of gradually reducing concentration. After washing in phosphate-buffered saline for three times, slides were infiltrated in 0.01 M citrate buffer (pH 6.0) and boiled for 15 minutes in microwave for antigen retrieval. Then 3% hydrogen peroxide was dropped onto the slides to quench the endogenous peroxidase activity.
The sections were incubated with rabbit anti-human monoclonal antibody against MMP-9 (1:500 dilution; ab58803; Abcam), MMP-2 (1:500 dilution; ab2462; Abcam), TIMP-1 (1:500 dilution; ab109125; Abcam), and TIMP-2 antibodies (1:500 dilution; ab79472; Abcam). The slides were incubated overnight at 4°C and then incubated with horseradish peroxidase for 30 minutes at 37°C; 3,3-diaminobenzidine tetrahydrochloride was used as chromogen for visualization.
The results of immunohistochemistry were evaluated by Rajkumar score,15 (link) in which the staining intensity was scored as (range: 0 to 3) and the percentage of positive cells as (range: 0 to 4 [0, {0%–10%}, 1 {11%–25%}, 2 {26%–50%}, 3 {51%–75%}, and 4 {76%–100%}]). After multiplying the scores of two parameters, slides with scores of 8 or higher were classified as high expression and slides with scores less than 8 as lower expression.
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