The largest database of trusted experimental protocols

17 protocols using shandon cryotome fse

1

Immunofluorescence Analysis of Ischemic Stroke

Check if the same lab product or an alternative is used in the 5 most similar protocols
On the 7th day after ischemic stroke, rats (n = 6) in each group were anaesthetized with 10 % chloral hydrate. Brains were fixed by transcardial perfusion with saline, followed by perfusion and immersion in 4 % paraformaldehyde. Fresh frozen sections of 5 μm thickness were cut on a cryostat microtome (Thermo fisher Scientific Shandon Cryotome FSE). Every 5th coronal section for a total of 6 sections was used for immunofluorescence staining. Prior to all staining procedures, tissue slices were extensively rinsed with 0.02 M PBS and blocked with 5 % normal goat serum in 0.02 M PBS containing 0.3 % Triton X-100 for 1 h. To identify the expressions of VEGF and BDNF in the IBZ, the slices incubated with rabbit primary antibodies to VEGF (1:50) and BDNF (1:200) at 4 °C overnight, followed by secondary antibodies to Alexa Fluor 488 labeled goat anti-rabbit IgG (H + L) (Life Technologies, USA) at 37 °C for 1 h. Nuclei were finally stained with 4′,6-diamidino-2-phenylindole in all images. The slices were visualized and digitally photographed with a confocal laser scanning microscope (Zeiss LSM710, Germany), 5 non-overlapping fields of one slice were randomly observed under a magnification of 10 × 40 in confocal images. To quantitatively analyze the proteins expression, Image-Pro Plus software was applied.
+ Open protocol
+ Expand
2

Quantitative NADPH-Diaphorase Histochemistry

Check if the same lab product or an alternative is used in the 5 most similar protocols
Soleus muscle samples were cut in 10 µm sections from the midbelly of the muscle using a cryostat (Thermo Scientific, Shandon Cryotome FSE) and allowed to air dry for 30 min. We used NADPH diaphorase histochemical analysis described by Hord, et. al [17 (link)] to ascertain the presence and localization of active nNOS. Soleus muscle cross-sections were fixed for 20 min with 2% paraformaldehyde, then washed 2X in PBS. Slides were then incubated at 37 °C for two hours in 50 mM Tris-HCl buffer (pH = 8.00) with 0.2% Triton-X-100, 0.5 mM nitrotetrazolium blue chloride, and 1 mM β-NADPH. Distilled water was used to stop the enzymatic reaction, and slides were then air dried. Soleus sections were then mounted with Vectamount permanent medium (Vectamount, Cat# H-5000, Vector Laboratories, Burlingame, CA, USA).
Images of stained were taken using a Zeiss Axioplot upright microscope and Zeiss Axiocam HRc color camera (Carl Zeiss Microimaging, Thornwood, NY, USA). NIH Image J was used to quantify NADPH-diaphorase-stained samples ImageJ by using the cross-sectional circumference (CSC) to quantify the percentage of the positively stained sarcolemma.
+ Open protocol
+ Expand
3

Biodistribution of Radiolabeled Peptides

Check if the same lab product or an alternative is used in the 5 most similar protocols
Wild-type mice were anesthetized (2.5% isoflurane in O2 at 1 L/min flow rate) and intravenously injected with [18F]AlF-NOTA-DV1-k-(DV3) and [68Ga]Ga-DOTA-DV1-k-(DV3) (3.5–4 MBq). After 75 min, mice were sacrificed by decapitation. Organs of interest were quickly excised and snap frozen in 2-methylbutane (−40 °C). Next, 20 μm sections of liver, kidney and spleen were obtained using a cryotome (Shandon cryotome FSE; Thermo Fisher Scientific, Waltham, MA, USA) and these were mounted on adhesive microscope slides (Superfrost Plus; Thermo Fisher Scientific, Thermo Fisher Scientific, Waltham, MA, USA) after which they were exposed to a phosphor storage screen (super-resolution screen; Perkin Elmer, Waltham, MA, USA) overnight. Screens were read in a Cyclone Plus system (Perkin Elmer, Waltham, MA, USA), and images were analyzed using OptiQuant software (Perkin Elmer, Waltham, MA, USA). The remaining excised tissue was further sectioned in 20 μm slices and stored at −20 °C.
+ Open protocol
+ Expand
4

Quantifying Tumor and Muscle Radiolabeled Peptide

Check if the same lab product or an alternative is used in the 5 most similar protocols
Melanoma tumor
mice and E. coli muscle infected mice
were anesthetized with isoflurane 2.5% in O2 at a flow
rate of 1 L/min, 3.5–5.5 MBq radiolabeled peptide was injected
i.v. via a tail vein, and after 30 or 60 min (n =
3–4/time point), mice were euthanized by decapitation. Tumor
and muscle tissues were dissected, rinsed with saline to remove blood,
and snap frozen in 2-methylbutane (cooled to −40 °C).
Next, 50 μm sections were obtained using a cryotome (Shandon
cryotome FSE; Thermo Fisher, Waltham, MA) and mounted on adhesive
microscope slides (Superfrost Plus; Thermo Fisher Scientific). The
slides were exposed to phosphor storage screens (super-resolution
screen; PerkinElmer, USA) for at least 12 h, screens were read in
a Cyclone Plus system (PerkinElmer), and images were analyzed using
Optiquant software (PerkinElmer).
+ Open protocol
+ Expand
5

Immunofluorescence Analysis of α-SMA in Rat Brain

Check if the same lab product or an alternative is used in the 5 most similar protocols
Rats were sacrificed at day 7 and their brain tissues (n = 3) were fixed in 4% paraformaldehyde. Fresh frozen coronal sections of 8 μm thickness were cut by a cryostat microtome (Shandon Cryotome FSE; Thermo Fisher Scientific), and every third slice of a total sections was selected for immunofluorescence staining. Samples were incubated with primary antibody against α-SMA (5 μg/mL, Abcam) overnight at 4°C. Subsequently, Alexa Fluor 594 that anti-mouse (1:200, Molecular Probes, Life Technologies) secondary antibody was used to incubate with samples for 2 h. Nuclei were stained with Hoechst 33342 (1:5000, Molecular Probes or Jackson Laboratories) for 10 min. Fluorescent labeling was examined with a confocal laser scanning microscope (Leica TCS SP8, Zeiss, Germany). Six non-overlapping fields of one slice in the penumbral cortex were evaluated for each rat, and Image-Pro Plus 6.0 was applied to analyze the proteins’ positive signal.
+ Open protocol
+ Expand
6

Histological and Immunohistochemical Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
H&E and IHC was performed as per the protocol mentioned earlier [37 (link), 52 ]. The frozen tissues were cut into 5 μm section using Shandon cryotome FSE (Thermo scientific) mounted on SuperFrost® plus slides (Thermo Scientific) at −30°C. For H&E staining slides were rehydrated by immersing in different percentages (100% to 50%) of alcohol. Dried slides were dipped into hematoxylin followed by eosin (H&E) stain. Slides were then dehydrated by immersing in different percentages of alcohol (50% to 100%). Finally slides were incubated in xylene for 2 min and images were captured in bright field microscope using 40× magnification (Leica DM200, USA).
For IHC, fixed slides were blocked in 100 μl blocking solution (5% FBS). It was then immunostained with anti-DR5 and anti-Ki-67 antibody and incubated overnight at 4°C. Slides were then washed with 1× TBST followed by incubation with a HRP conjugated secondary antibody for 30–60 min at room temperature and then developed using 3,3′-Diaminobenzidine (DAB) peroxidase substrate kit (SK-4100, Vector Laboratories, CA, USA). Images were captured at 40× magnification using brightfield microscope (Leica DM2000, USA).
+ Open protocol
+ Expand
7

In Vivo PET Imaging of Melanoma Uptake

Check if the same lab product or an alternative is used in the 5 most similar protocols
A B16.F10 melanoma-inoculated mouse, generated as mentioned above, and a healthy C57BL/6 mouse were injected with 4.5-5.5 MBq of [11C]NMS-E973. After 30 min, an overdose of pentobarbital (200 mg/kg I.P. Doléthal, Vetoquinol N.V. Aartselaar, Belgium) was administered followed by perfusion with saline via the left ventricle, followed by opening of the right atrium, until the liver turned pale. Organs of interest were quickly excised and snap frozen in 2-methylbutane (-40 °C). Next, 60 µm sections were obtained using a cryotome (Shandon cryotome FSE; Thermo Fisher, Waltham, MA) and these were mounted on adhesive microscope slides (Superfrost Plus; Thermo Fisher Scientific) after which they were exposed to a phosphor storage screen (super-resolution screen; Perkin Elmer, Waltham, MA) overnight. The remaining excised tissue was further sectioned in 20 µm slices and stored at -20 °C.
+ Open protocol
+ Expand
8

Xenograft Tumor Induction and Tissue Harvesting

Check if the same lab product or an alternative is used in the 5 most similar protocols
10×106 LNCaP, SKOV-3, or PC3 cells per mouse in 50% Matrigel (VWR, Radnor, U.S.A.) were subcutaneously inoculated into the right shoulder of 7-8-week-old BALB/c nu/nu mice (body mass 20-25 g) obtained from Janvier (La Genest-Saint Isle, France). The tumours were allowed to grow for 4-5 weeks until they reached ~0.5-0.75 cm3 in size as determined using a caliper. 5×105 B16.F10 cells per mouse were implanted subcutaneously in the right dorsal flank of 8-week-old C57BL/6 mice (body mass 20-25 g) purchased from Janvier (La Genest-Saint Isle, France). The tumours were allowed to grow for 10-15 days until they reached ~0.5-0.75 cm3 in size as determined using a caliper. Subsequently, the mice were anesthetized with 2.5% isoflurane in O2 at a flow rate of 1 L/min after which they were sacrificed by decapitation. Tumour or muscle tissue was excised, rinsed with saline to remove blood and rapidly frozen in 2-methylbutane (-40 °C). Next, 20 µm sections were obtained using a cryotome (Shandon cryotome FSE; Thermo Fisher, Waltham, MA) and these were mounted on adhesive microscope slides (Superfrost Plus; Thermo Fisher Scientific) and stored at -20 °C.
+ Open protocol
+ Expand
9

Leafhopper-mediated Virus Inoculation

Check if the same lab product or an alternative is used in the 5 most similar protocols
Then, approximately 15 viruliferous or nonviruliferous leafhoppers were reared in small cages to inoculate the two rice seedlings for 2 days, respectively (Figure 7—figure supplement 1). The feeding areas of the tested plants were embedded with O.C.T. Compound (Sakura, Torrance, CA, USA) and then sectioned with a Shandon Cryotome FSE (Thermo Fisher Scientific). The sections were ultimately immunolabeled with virus-FITC and Rab5-, CD63-, or Rab27a-rhodamine, and processed for immunofluorescence microscopy, as shown above. Rice without leafhopper feeding was treated exactly as the same.
+ Open protocol
+ Expand
10

Cryopreservation and Sectioning of Tumour and Brain Tissue

Check if the same lab product or an alternative is used in the 5 most similar protocols
Tumour xenografts/healthy mice were anesthetized with 2.5% isoflurane in O2 at a flow rate of 1 L/min after which they were sacrificed by decapitation. Tumour/brain tissue was excised, rinsed with saline to remove blood and rapidly frozen in cooled 2-methylbutane (− 40 °C). Cryotome sectioning (Shandon cryotome FSE; Thermo Fisher, Waltham, MA) was performed to obtain 20 µm-sections. Tumour tissue slices were sectioned centrally and mouse brain sections were sectioned horizontally starting from 4.96 mm interaural and − 5.04 mm bregma to 3.16 and − 6.84, respectively. Sections were fixed on adhesive microscope slides (Superfrost Plus; Thermo Fisher Scientific) and stored at − 20 °C.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!