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32 protocols using ab207298

1

Western Blot Analysis of FoxM1 Protein

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The total protein was extracted from HCCA cells or homogenate of tumor tissue using radio‐immunoprecipitation assay cell lysis buffer (20–188, Sigma), with protein concentration measured using the bicinchoninic acid protein assay kits (23235; Thermo Fisher Scientific). Protein samples were separated through 10% sodium dodecyl sulfate‐polyacrylamide gel electrophoresis and then transferred onto polyvinylidene fluoride membranes, and blocked with bovine serum albumin, and incubated with anti‐FoxM1 (1:1000; ab207298; Abcam Inc) and anti‐GAPDH (1:2500; ab8245; Abcam) at 4°C overnight. Next, the membranes were cultivated with HRP‐conjugated immunoglobulin G (IgG; 1: 2000; ab6721; Abcam) for 2 h. The membranes were mixed with luminol‐based chemiluminescence substrate and the protein bands were analyzed by the Image J software (Bio‐Rad Laboratories), with GAPDH as the internal reference.
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2

Immunohistochemical Evaluation of Cell Cycle Regulators

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The surgically resected sections of the highest nuclear grade were selected in each case, and FFPE specimens were prepared for immunohistochemical study. We used primary antibodies against the forkhead box protein M1 (FOXM1; 1:100; rabbit monoclonal, ab207298; Abcam), polo‐like kinase 1 (PLK1; 1:100; rabbit monoclonal, 4513; Cell Signaling Technology), and cyclin‐dependent kinase 1 (CDK1; 1:100; mouse monoclonal, MA5‐11472; Thermo Fisher Scientific).
Immunohistochemical staining was independently assessed by two pathologists. The nuclear staining intensity was classified into four categories: “0” for negative staining, “1” for weak staining, “2” for moderate staining, and “3” for strong staining. For FOXM1 and PLK1, we regarded tumor cells with a nuclear staining intensity ≥2 as positive and evaluated the labeling index in a hot spot (Figure S1B). A labeling index ≥3% was defined as indicative of a positive case for FOXM1, and the existence of any positive tumor cells was defined as a positive case for PLK1. On the other hand, for CDK1, the H‐score was calculated as previously described (Figure S1B).30, 31 An H‐score ≥75 was defined as indicative of a positive case for CDK1. These cutoff values were determined by a time‐dependent receiver‐operating characteristic (ROC) curve, as described below.
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3

Immunohistochemical Analysis of CENPF and FOXM1

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The sections were deparaffinized in xylene and hydrated in a graded series of ethanol, then antigen retrieved by heat exposure in Tris/EDTA buffer (pH 9.0) for 15 min, and blocked for endogenous peroxidase activity in 3% hydrogen peroxide at room temperature for 10 min. Followed by blocking with 5% normal blocking serum, the sections were reacted with anti-CENPF (1:200 dilution, ab5) (28 (link)) or anti-FOXM1 (1:250 dilution, ab207298) (both from Abcam) (29 (link)) at 4°C overnight. After probing with HRP-conjugated secondary antibody, immunocomplexes were visualized using 3,3′-diaminobenzidine (DAB) (both from Long Island Biotech Co., Ltd.) and lightly counterstained with hematoxylin. The sections were reviewed and classified by two independent investigators as previously described (27 (link)). The percentage of positive stained cancer cells was scored as 0, negative; 1, 1–10%; 2, 11–50% positive; 3, >50% positive. The staining intensity was scored as 0, absent; 1, weak; 2, moderate; 3, strong. The immunoreactive score (IS) was calculated as follows: IS= percentage × staining intensity. The protein was considered to be highly expressed when IS was 3–9, otherwise to be lowly expressed.
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4

Immunofluorescence Assay of Cell Markers

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Cells were prepared on the culture slide for IF assay, rinsed in PBS and fixed. Following blocked in 5% BSA, cell samples were probed severally with the primary antibodies targeting E-cadherin (1:100, ab194982, Abcam) and N-cadherin (1: 200, ab98952, Abcam), β-catenin (1:100, #8480, Cell Signaling Technology) and FOXM1 (1:250, ab207298, Abcam) first and with corresponding secondary antibodies next. After washing, slides were processed with DAPI and analyzed under microscopy.
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5

Molecular Cloning and Antibody Validation

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The pcDNA-His-ANXA1 and two truncated constructs of ANXA1 (1-185 aa, 186-346 aa) were all created by cloning them into the pcDNA3.1 vector with the CMV promoter and the appropriate epitope tags. HA-Ub-WT, HA-Ub-K6, HA-Ub-K11, HA-Ub-K27, HA-Ub-K29, HA-Ub-K33, HA-Ub-K48 and HA-Ub-K63 plasmids were kind gifts from Professor Ronggui Hu (Chinese Academy of Sciences). To construct lncRNA Gm26917 overexpression plasmids, Gm26917 cDNA was synthesized and cloned into the pCDH vector by Miaoling (Wuhan, China).
Antibodies used for Western blotting, coimmunoprecipitation, or immunofluorescence were as follows: ANXA1 (EH17a, sc-12740, Santa Cruz), GAPDH (T004, Affinity), anti-HA antibody (Y-11, sc-805, Santa Cruz), His antibody (ZENBIO, 230001), NEMO (F-10, sc-166398, Santa Cruz), p65 (ZENBIO, 250021), p-p65 (ZENBIO, 310013), IKK-α (C-6, sc-166231, Santa Cruz), p-IKK-α/β (CST, #2694, USA), F4/80 (C-7, 377009, Santa Cruz), CD68 (ab125212, Abcam), FOXM1 (EPR17379, ab207298, Abcam).
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6

Analyzing FOXM1 Ubiquitination in Lung Cells

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MLE-12 cells were treated with MG132 (10 μM) (MedChemExpress Co., Ltd., Monmouth Junction, NJ, USA) for 2 h, with dimethylsulfoxide (DMSO) (MedChemExpress Co., Ltd.) as the control [29 (link)]. Lung tissues or cells in different groups were lysed using RIPA buffer, heated at 100℃ for 10 min, and centrifuged at 12,000 g for 10 min. followed by determination of protein concentrations. Lysates were incubated with antibodies (FOXM1: ab207298, Abcam; IgG: ab133470, Abcam) (antibody/lysate = 1 μg/mg), followed by the addition of 30 μL protein A/G plus-agarose beads and overnight incubation at 4 ℃. Samples were added with 25–30 μL protein loading buffer and placed in metal bath at 100 ℃ for 5 min for degeneration. The ubiquitination level of FOXM1 was examined using an anti-Ubiquitin antibody (ab19247, Abcam). Each experiment was performed in triplicate.
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7

Profiling Protein Expression in HGSOC Cell Lines

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Total protein was isolated and collected from HGSOC cell lines with radioimmunoprecipitation assay lysis buffer (Santa Cruz Biotech, Santa Cruz, CA, USA). The isolated proteins with equal quantity were further separated by sodium dodecyl sulphate–polyacrylamide gel electrophoresis (SDS-PAGE; 10% or 12%), followed by transferring onto separate polyvinylidene fluoride membranes (Beijing Solarbio Science& Technology, Beijing, China). The antibodies used for immunoblotting were the following: GAPDH (Cell Signaling Technology, Beverly, MA, USA), SOCS7 (ab224589; Abcam, Cambridge, MA, USA), HuR (ab238528; Abcam), Cyclin D1 (ab16663; Abcam), Survivin (ab76424; Abcam), CDC25B (ab124819; Abcam), and FOXM1 (ab207298; Abcam). After incubating with horseradish peroxidase-conjugated secondary antibody (Beyotime Institute of Biotechnology), the signals were further examined based on an enhanced chemiluminescence system (Bio-Rad, Richmond, CA, USA).
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8

Multiplex Immunofluorescence Profiling of CAF Markers

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Assessment of protein expression of CAF-markers, EZH2 and FOXM1 was performed by mIF technology. For mIF staining, CAF-markers, EZH2 and FOXM1 antibody panel and Opal 7-color manual IHC kit (50 slides kit, Perkin Elmer/Akoya, NEL871001KT) was used. Before a run was started tissue TMA slides were baked for 4 hours at 65 °C in an oven. The following primary antibodies were used: FOXM1 antibody (ab207298, abcam,1:200 dilution), EZH2 antibody (D2C9, Cell Signaling Technology, 1:50dilution), FAP antibody (ab207178, abcam,1:200 dilution), FSP1 antibody (ab19896, abcam,1:500 dilution) and α-SMA antibody (D4K9N, Cell Signaling Technology, 1:200dilution). Slides were incubated for 60 minutes with the first antibody and rinsed in three changes of TBST buffer for 2 minute each, followed by detection using Polymer HRP Ms. + Rb for 10 minutes, OPAL dye incubation (1/75 dilution) for 10 minutes. Cycles were repeated for each new antibody to be stained. The nuclei were subsequently visualized by detecting nuclear spectral elements using DAPI. The sections were mounted with ProLongTMDiamond (Introgen™, cat p36970).
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9

Western Blot Analysis of FoxM1 in Islet Samples

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Islet samples were boiled in Laemmli buffer containing 10 mM dithiothreitol at 100°C for 5 min, subjected to sodium dodecyl sulfate‐polyacrylamide gel electrophoresis and transferred onto nitrocellulose membranes, then blocked in Tris‐buffered saline with 3% fetal bovine serum. Nitrocellulose membranes were incubated with primary antibodies to FoxM1 (ab207298, Abcam) at a 1:2,000 dilution and Actin (A2066, Sigma) at a 1:5,000 dilution, and then incubated with a secondary horseradish peroxidase‐conjugated antibody (NA9340; GE Healthcare, Tokyo, Japan) at a 1:10,000 dilution. These antibodies were dissolved in Can Get Signal (Toyobo). As blottings of FoxM1 and actin were performed using the same membrane. Quantitative data were obtained by employing the Pierce ECL Plus Western Blotting Substrate (Thermo Fisher Scientific, Waltham, MA, USA) and the ChemiDoc Touch Imaging System (Bio‐rad Laboratories). Relative intensities were standardized employing actin intensity as the invariant control using ImageJ Fiji. Uncropped images are presented in Figure S1.
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10

Immunohistochemical Analysis of PCNA and FOXM1

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Histological analyses were performed essentially as described before [38 ,39 (link)]. Paraffin sections were stained with were blocked with 10% normal goat serum for 1 h at room temperature and then incubated anti-PCNA (Proteintech, 10205-1, 1:250) or anti-FOXM1 (Abcam, ab207298, 1:200) antibodies. Staining was visualized by incubation with anti-rabbit secondary antibody and developed with a streptavidin-horseradish peroxidase kit (Pierce) for 20min. Pictures were taken using an Olympus IX-70 microscope. Quantifications were performed with Image J.
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