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20 protocols using hygrogold

1

HEK Cell Line Co-transfection Maintenance

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HEK cell line stably co-transfected with pUNO-TLR4 and pDUO2-MD2-CD14 were purchased from InvivoGen and maintained in culture in DMEM supplemented with 10% FCS, normocin (100 µg/mL), blasticidin (10 µg/ml) and hygrogold (50 µg/ml) at 37 °C, according to the manufacturer’s instructions of (InvivoGen).
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2

Inflammatory response regulation protocol

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Palmitate (Cat#P5585), oleate (cat#O1008), myristate (cat#M3128), Stearate (cat# W303518), sodium propionate (cat#P5436), LPS (cat#L4391), Trolox (cat#238813), NDGA (cat#74540), PMA (cat#P1585), Poly I:C (cat#P9582), chlorpromazine (cat#C8138), and resveratrol (cat#R5010) were purchased from Sigma (San Diego, CA, USA). Recombinant human TNF-α (cat# 210-TA-100) was obtained from R&D systems (Minneapolis, MN, USA). Pepinh-TRIF (trif inhibitory peptide: RQIKIWFQNRRMKWKK-FCEEFQVPGRGELH-NH2; Pepinh-Control: RQIKIWFQNRRMKWKK-SLHGRGDPMEAFII-NH2. cat# tlrl-pitrif), Quanti-blue medium (cat#rep-qb-2) were purchased from InvivoGen (San Diego, CA, USA). Cell lysis buffer (cat#9803) were obtained from Cell Signaling (Cell Signaling Technology Inc., Danvers, Massachusetts, United States). IRF3 (ID 3661) Trilencer-27 Human siRNA (SR320690), TLR4 (ID 7099) Trilencer-27 Human siRNA (SR322051) and scrambled (control) siRNA (SR30004) were purchased from OriGene (OriGene Technologies Inc. Rockville, MD, USA). Antibiotics zeocin (cat#ant-zn), normocin (cat#ant-nr) and hygroGold (cat#ant-hg) were purchased from InvivoGen (San Diego, CA, USA). TLR4 neutralizing antibody (cat#mabg-htlr4), IgA2 isotype control (maba2-ctrl) InvivoGen (San Diego, CA, USA).
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3

Fission Yeast Strain Selection Protocol

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All the S. pombe strains used in this study are shown in Table 1. Selection for strains containing telomere cassettes was performed in Edinburgh minimal medium with sodium glutamate substituted for ammonium chloride (EMMG) without uracil and with appropriate amino acid supplements and 100 μg/ml HygroGold (InvivoGen) (81 (link)). Nonselective growth of strains bearing the telomere cassettes was done in EMMG with adenine, histidine, uracil, leucine, lysine, and arginine (EMMG plus AHULKR) and without hygromycin. Preparation of 10 mM ahTET stock and plates was performed as described previously (34 (link)). 5-Fluoroorotic acid (5-FOA) plates were yeast nitrogen base plates with 1 mg/ml 5-FOA (Toronto Research Chemicals, Inc.) (http://www-bcf.usc.edu/~forsburg/drugs.html) and with the appropriate supplements. All recombinant DNA procedures were carried out in NEB 5-alpha (New England BioLabs) and TOP10 (Life Technologies) competent cells.
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4

HeLa Cells for Protein Expression

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HeLa tet-off cell lines (Clontech), in which expression from pTRE vectors is regulated by doxycycline, were cultured in Dulbecco’s modified Eagle’s medium (DMEM; Sigma-Aldrich, St. Louis, MO) supplemented with 10% fetal bovine serum (FBS; J R Scientific, Woodland, CA), 200 μg/ml G418 (Nacalai Tesque, Kyoto, Japan), 100 units/ml penicillin G (Sigma-Aldrich), and 100 μg/ml streptomycin (Sigma-Aldrich) in a humidified 5% CO2/95% air atmosphere at 37°C. HeLa tet-off cell lines for doxycycline-regulated expression of YFP, SOD1-WT-YFP, or SOD1-G85R-YFP were selected in medium supplemented with 500 μg/ml HygroGold (Invivo-Gen, San Diego, CA) and 1.0 μg/ml doxycycline (Sigma-Aldrich). For transfections, cells were seeded on 3.5-cm dishes (BD, Franklin Lakes, NJ) or 3.5-cm glass-based dishes (Asahi-Technoglass, Tokyo, Japan) 1 day before transfection. All constructs were transfected using Effectene (Qiagen, Dusseldorf, Germany). For photoactivation analysis, mixtures of pTRE-SOD1-G85R-mPAGFP and pTRE-SOD1-G85R-TagRFP constructs (1:1) were transfected into HeLa tet-off cells. For FRET-FLIM assays, pTRE-SOD1-G85R-cp173mVenus or the control pTRE-SOD1-G85R-mVenus was cotransfected with pTRE-SOD1-G85R-mTFP1 at a ratio of 3:1.
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5

Assessing NF-κB Activation via IL-1β Stimulation

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Human THP-1 cells from the American Type Culture Collection (ATCC, Manassas, VA) were grown at 37°C with 5% CO2 in RPMI-1640 medium supplemented with 10% FBS (v/v), 100 U/ml-100 µg/ml penicillin-streptomycin, and 50 µM β-mercaptoethanol. The NLRP3-deficient THP-1 cells (THP1-defNLRP3, InvivoGen) were grown at 37°C with 5% CO2 following InvivoGen’s instruction in RPMI-1640 medium supplemented with 10% FBS (v/v), 200 µg/ml HygroGold, and 100 µg/ml normocin. HEK-Blue IL-1β cells that contain an IL-1β-sensitive reporter were from InvivoGen and grown following InvivoGen’s instruction at 37°C with 5% CO2 in Dulbecco’s modified Eagle’s medium (DMEM) supplemented with 5% FBS (v/v), 4.5 g/l glucose, 2 mM GlutaMAX medium, 100 U/ml penicillin, 100 µg/ml streptomycin, 100 µg/ml zeocin, 200 µg/ml hygromycin, and 100 µg/ml normocin (all from Life Technologies or InvivoGen).The level of secreted embryonic alkaline phosphatase (SEAP) protein, a truncated form of human placental alkaline phosphatase released into the culture medium, was used as a measurement of NF-κB activation through IL-1β stimulation with the QUANTI-Blue™ detection reagent.
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6

Culturing Engineered HEK293 Cell Lines

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The stably transfected human embryonic kidney epithelial cell line HEK 293-hTLR4/MD2-CD14 and HEK293 hTLR2 (InvivoGen, San Diego, CA, USA) were cultured in DMEM with 10% FBS (Eurclone, Milan, Italy), 10 μg/mL Blasticidin-S and 50 μg/mL HygroGold® (both by InvivoGen, San Diego, CA, USA).
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7

Stable Transfection of S2 Cells

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S2 cells were grown at 26 °C in Schneider’s Drosophila medium (Gibco), supplemented with 10% FBS. S2 cells were transfected using Lipofectin reagent (Invitrogen), according to the manufacturers’ recommendations. In brief, to obtain a stable clone, pAc–EGFP–Flag–SMARCAD1 or pAc–EGFP was co-transfected with pCoHygro (Invitrogen) using Lipofectin reagent. After 22 h of transfection, DNA-containing medium was replaced with selection medium supplemented with 10% FBS and 300 μg/mL HygroGold (InvivoGen).
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8

THP-1 Cell Line Cultivation and Manipulation

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THP-1 cells (ATCC TIB-202), THP1-defASC cells, and THP1-defNLRP3 cells (InvivoGen, Toulouse, France) were used in this study. The cells were cultured in CCM. Additionally, the ASC- and NLRP3-deficient THP-1 cells were cultured in CCM supplemented with HygroGold (200 µg/mL, InvivoGen) to maintain the siRNA responsible for suppression of ASC or NLRP3. All cell lines were sub-cultured twice per week, seeded to a cell density of 2 × 105 cells/mL, and not allowed to grow to a density greater than 1 × 106 cells/mL. Cells were not cultured beyond twenty passages to prevent genetic divergence.
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9

HEK-Blue hTLR4 and Null2 Cell Culture

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HEK-Blue hTLR4 and Null2 cells (InvivoGen) were grown in complete growth medium (Dulbecco's modified Eagle's medium with 10% heat-inactivated fetal calf serum, 100 units per ml penicillin, 100 μg ml−1 streptomycin, 2 mM GlutaMAX, 1 mM pyruvate (Gibco, Life Technologies) and 100 μg ml−1 Normocin (InvivoGen)) in presence of cell line-specific selection antibiotics. Selection antibiotics for HEK-Blue hTLR4 cells included 100 μg ml−1 Zeocin, 200 μg ml−1 Hygrogold and 30 μg ml−1 Blasticidin, and for Null2 cells 100 μg /ml−1 Zeocin only (InvivoGen). The HEK-Blue hTLR4 reporter cell line was stably transfected with human TLR4, MD-2/CD14 co-receptor and the secreted embryonic alkaline phosphatase under the control of an nuclear factor kappa beta (NFκB)-responsive promoter. Null2 cells served as the parental control cell line and were stably transfected with the NFκB-responsive, secreted embryonic alkaline phosphatase reporter only. Cells were grown at 37 °C and 5% CO2.
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10

Inducing Degradation of MCM2-mAID in Human Cells

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Human cell culture was undertaken as described previously (Natsume et al. 2016 (link)). To induce the degradation of MCM2-mAID, 500 µM indole-3-acetic acid (IAA; a natural auxin; Nacalai Tesque) was added to the culture medium unless otherwise noted. The RAD51 inhibitor RI-1 (Abcam) and bleomycin (Nippon Kayaku) were used at concentrations of 100 µM and 10 µg/mL, respectively. Transfection was performed using FuGENE HD (Promega). Transfected cells were selected with 1 µg/mL puromycin, 700 µg/mL G418, or 100 µg/mL HygroGold (InvivoGen). The detailed procedure for generation of mutant cells was described previously (Natsume et al. 2016 (link)).
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