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Thermoshaker

Manufactured by Avantor
Sourced in Germany, Poland, United States

The Thermoshaker is a laboratory device designed to combine shaking and temperature control functions. It is used to incubate and agitate samples at a controlled temperature to facilitate various laboratory processes, such as cell culture, enzyme assays, and biochemical reactions.

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5 protocols using thermoshaker

1

Deubiquitination Assay with USP21

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Bead-bound material from UBA-His6 binder pulldowns (above) was resuspended in deubiquitinating-buffer (50 mM HEPES pH 7.5, 100 mM NaCl, 2 mM DTT, 1 mM MnCl2, 0.01% Brij-35) without or with 0.5 μM USP21 (Ubiquigent). Samples were incubated (1 hr, 30°C) in a thermoshaker (VWR, 750 rpm) and subsequently denatured by incubation (65°C, 20 min) with 2 x Laemmli buffer + DTT (20 mM) followed by separation on SDS-PAGE. For UbiCREST analysis (Hospenthal et al., 2015 (link)), FH-RNF26WT from stably expressing Flp-In293 cells (4 mg) was immunoprecipitated by anti-FLAG agarose, washed, divided and individually incubated with the panel of recombinant DUBs, according to the manufacturer’s instructions (Boston Biochem).
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2

Isolation and Culture of Porcine Müller Glia

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Müller glia cells were isolated by digestion of the porcine retinas with 1% papain (Thermo Fisher Scientific, Karlsruhe, Germany) and DNase I (AppliChem, Darmstadt, Germany) for 15 min at 37 °C with gentle shaking (900 rpm) in a thermo shaker (VWR, Darmstadt, Germany) until homogeneous. After centrifugation (table centrifuge, 5 min) the cell pellet was resuspended in MC culture medium (low-glucose DMEM (Thermo Fisher Scientific, Karlsruhe, Germany) supplemented with 5% fetal bovine serum (FBS, Merck, Darmstadt, Germany) and 1% penicillin/streptomycin (P/S, Gibco, Germany), and the entire cell suspension was transferred into 0.1% gelatin-coated culture vessels (Thermo Fisher Scientific, Karlsruhe, Germany). By replacing the medium until cells were confluent and passaging them into freshly-coated dishes, a pure culture of MCs was obtained after three passages (identified by morphology and immunostaining against GFAP and vimentin) [62 (link)]. Cells were cultivated at 5% CO2 at 37 °C in an incubator. No passages higher than five were used.
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3

Plasma Protein Precipitation for HPLC

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For protein precipitation 50 µL plasma sample is mixed with 150 µL of cooled 5% sulfosalicylic acid followed by 20 min equilibration on a thermo-shaker (4 °C, VWR, Vienna, Austria). Afterwards, samples are centrifuged (8 min, 4 °C, 4200 g, VWR, Vienna, Austria), and 30 µL of the supernatant is transferred to a HPLC vial with a 200 µL glass inlet that also contains 150 µL of acetonitrile as well as 20 µL of an internal standard (Sigma Aldrich, Vienna, Austria, Cell Free Amino Acid Mixture—13C,15N) and is rigorously mixed. The prepared sample is stored at −80 °C until analysis.
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4

Antioxidant Capacity of Edible Films

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The antioxidant capacity (AC) of the films was tested using DPPH (2,2-diphenyl-1-picrylhydrazyl) radical and applying the QUENCHER method [39 (link)], which is based on the direct contact of a solid film with DPPH solution. The tested film was insoluble in the radical solution, and the reactions occurred at the sample’s surface. To determine the AC of the prepared films, 0.1 g of the film was ground in a mill and placed in a test tube to which 6 cm3 of 60.86 µmol/dm3 DPPH solution in methanol was added. Then, the test tube was put to a shaker (Thermoshaker, VWR International, LLC, Gdańsk, Poland) at 650 rpm for 15 min. Afterward, the test tube was kept in the dark place for 15 min, and then the UV-VIS spectrum of supernatant was registered at 517 nm using a UV-VIS spectrophotometer. The analysis was conducted in triplicate. The percentage of scavenging of the DPPH radical was calculated according to Formula (2): %DPPH=A0AsA0100%,
where A0 is the absorbance of DPPH solution, and As the absorbance of DPPH solution after contacting the studied film.
A calibration curve based on Trolox solutions showing a linear dependence of the percentage of DPPH scavenging (% DPPH) on Trolox concentration was prepared. The AC of the tested film was expressed in μmol of Trolox equivalents per 100 g of the studied film [40 (link)].
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5

Optimized Extraction and Analysis of Dye Mixtures from Polyester Fibers

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For optimization and validation of the developed method, methanol stock solutions of commercially available dyeing mixtures (D1–D9, Table 6) at a concentration of 1 mg·mL−1 were used as standards. In total, 10 μL of each of the stock solutions were placed in a PCR tube, then the solvent was evaporated under a nitrogen atmosphere at 40 °C using a sample concentrator (Liebisch, Germany). Subsequently, the residues were dissolved in 50 µL of BGE, centrifuged for 5 min at 12,000× g rpm (Microfuge 16 Centrifuge, Beckman Coulter, Krefeld, Germany), and analyzed.
Polyester threads of 1 or 4 cm length (consisting of approximately 50 single fibers) were used as a sample. Extraction was carried out in glass vials closed with caps with 50 μL of chlorobenzene at 100 °C in a thermoshaker (VWR, Radnor, PA, USA) operating at 1000 rpm for 0.5, 1, or 6 h, depending on the experiment. The preparation of five samples (P10, P13a, P13b, P17, P18) required some adjustments (see Table 8 for details).
The extracts were transferred to PCR tubes with the use of a micro syringe to avoid transferring microfibers. The extracts were then evaporated to dryness under gentle nitrogen flow (40 °C) and dissolved similarly to dye standards.
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