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14 protocols using sv120

1

Fluorescent Immunohistochemistry of Brain Tissue

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The brains were prefixed by perfusion with 4% paraformaldehyde and sectioned using the Leica freezing microtome. The sections (25 μm thick) were rinsed with PBS and incubated with 0.5% Triton X-100 in PBS for 30 min for blocking. Following this, the brain sections were incubated with primary antibodies overnight at 4 °C, followed by incubation with Alexa Fluor 488 goat anti-rabbit or Alexa Fluor 594 goat anti-mouse secondary antibody for 1 h in the dark at room temperature. To stain the DNA, sections were incubated with DAPI for 5 min. Stained sections were imaged using a scanning microscope (SV120, Olympus, Japan). Rabbit polyclonal NKp46 (Cat No.: PA5-102860; Invitrogen, CA, USA), mouse monoclonal RAC1 (Cat No.:66122-1-Ig; Proteintech, Wuhan, China), mouse monoclonal tyrosine hydroxylase (Cat No.: TA506541; OriGene Technologies, Wuxi, China), and mouse monoclonal α-syn (Cat No.: BS-0012M; Bioss, MA, USA) antibodies were used.
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2

Immunohistochemical Analysis of Brain Slices

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Paraffin-embedded brain slices were used for H&E staining and IHC analysis as previously described [18 (link)]. Briefly, 4 μm-thick brain slices were deparaffinized, rehydrated, endogenous peroxidase blocked, antigen-retrieved, blocked with 5% BSA, incubated with primary and corresponding secondary antibodies (Polink-1 HRP DAB Detection System, ZSGB-BIO, China), and the colorimetric end products were produced by applying diaminobenzidine tetrachloride. Primary antibodies were anti-Ki67 (1:100, ab16667, Abcam, UK), anti-CD3 (1:2000, ab237721, Abcam, UK), anti-CD4 (1:2000, ab183685, Abcam, UK), anti-CD8 (1:2000, ab209775, Abcam, UK), and anti-FoxP3 (1:100, #12,653, CST, USA). Whole brain images were obtained by scanning the brain sections at 200×magnification with an automatic slice scanning system-SV120 (Olympus, Japan). Statistical analysis used data from 6 slices from 6 mice brains per group. The data were expressed as mean number of positive cells per mm2 microscopic field.
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3

Immunofluorescence Analysis of Paraffin-Embedded Brain Tissue

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Brains were paraffin-embedded, and slices (5 μm thickness) were used for immunofluorescence analysis. After removing paraffin with xylene, slices were subjected to rehydrated through incubation in gradient ethanol. Followed by antigen repairing in sodium citrate, the slices were then going through membrane rupturing with 0.5% Triton X-100 and blocking in 5% BSA at room temperature. After that, sections were incubated with primary antibodies at 4°C overnight. The primary antibodies were as follows: after 3 times washing with PBS, sections were incubated with fluorescent secondary antibodies (Alexa Fluor 488 and 594). DAPI was needed for the staining of nuclei for 10 min at 25°C. Finally, immunofluorescence images were observed with a microscope (SV120, OLYMPUS).
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4

Immunofluorescence Staining of Mouse Brain

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After aforementioned deparaffinage, dehydration, and antigen recovery, mice brain slices were washed with PBS for 3 × 5 min and blocked in 5% donkey serum containing 0.5% Triton X-100 for 40 min. Next, slices were incubated with primary antibody (listed in Table 1) at 4°C for 24–48 h. After incubation with secondary antibody at 37°C for 1 h, slices were washed with PBS for 3 × 5 min and stained with DAPI reagent (G1012, Servicebio) for 10 min at room temperature. Slices were sealed with anti-fluorescence quencher (G1401, Servicebio) and imaged using a scanning microscope (SV120, OLYMPUS).
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5

Nissl Staining for Brain Sections

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Paraffin-embedded brain sections (4-μm thick) were stained with Nissl staining solution (Servicebio, Wuhan, China) for 5 min and then washed with running water until they turned colourless. If the slice was hyperchromatic, 0.1% glacial acetic acid was used for differentiation. The sections were dried, mounted on coverslips using Permount TM Mounting Medium and examined under a scanning microscope (SV120, OLYMPUS, Japan).
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6

Immunofluorescence Staining of Lung Tissues

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IF staining experiment was carried out according to the established method.34 (link) After the formalin-fixed lung tissues were embedded, sliced, deparaffinage, dehydration, and antigen recovery, IF staining was conducted. Briefly, sections were blocked in goat serum with 0.3% Triton X-100 in PBS for 1 h. Then, primary antibodies (listed in the Supplementary Table 1) were incubated at 4 °C overnight. The next day, sections were incubated with Alexa Fluor secondary antibodies at 37°C for 1 h and were washed with PBS. Finally, sections were stained with DAPI for 10 min. After washing, sections were sealed with anti-fluorescence quencher. The images were captured by the Olympus microscope SV120.
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7

TUNEL Staining for Apoptosis Analysis

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TUNEL staining assay was performed using the One-Step TUNEL in situ Apoptosis Assay Kit (Elabscience, Wuhan, China) according to the manufacturer’s instructions. In brief, paraffin-embedded mouse brain slices (4 μm thick) were deparaffinised in xylene, rehydrated in gradient ethanol, incubated with TUNEL reagent mixture for 60 min, counterstained with DAPI for 5 min and examined under a fluorescence microscope (SV120, OLYMPUS, Japan). The TUNEL index (apoptosis rate) was calculated as the proportion (%) of TUNEL-positive neurons among DAPI-positive neurons.
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8

Tracing Nigrostriatal Projections Using Viral Vectors

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Totally 150 nL of AAV9‐TH‐Cre, AAV9‐DIO‐TVA‐EYFP, and AAV9‐DIO‐G were mixed in 3:1:2 and injected into left SNc. Once the helper virus reach the expression peak, the retrograde virus RV‐EnVA‐ΔG‐dsRed were injected in the same site with a mass of 150 nL. After 10 days of expression, mice were sacrificed to remove the brains. All brains were fixed in 4% paraformaldehyde and dehydrated with 20% and 30% sucrose. Then, brains were sliced in 30 μm at nine representative coronal levels from bregma: +2.0, +1.5, +0.5, −0.5, −1.2, −2.0, −3.0, −4.0, −5.6, and −6.6 mm. Next, all the slices were imaged via an automatic scanning fluorescence microscope (Olympus, SV120). Finally, neurons marked by fluorescent proteins in corresponding upstream brain regions were calculated by Image J (Fiji). All brain regions we analyzed included the Primary motor area (MOp), Nucleus accumbens (ACB), Caudoputamen (CP), Substantia innominate (SI), External segment of Globus pallidus (GPe), Central amygdala nucleus (CeA), Paraventricular hypothalamic nucleus (PVH), Zona incerta (ZI), Reticular part of Substantia nigra (SNr), Periaqueductal gray (PAG), Motor related Superior colliculus (SCm), Inferior colliculus (IC), Parabrachial nucleus (PB), and Interposed nucleus (IP), which was aligned by the mouse brain map of Allen Brain Atlas.
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9

Brain Tissue Silver Staining Protocol

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Free-floating brain sections were washed with Tris-buffered saline (TBS) for 3 × 5 min, and then placed in 5% periodic acid followed by alkaline silver iodide solution and developer solution (#G1052, Servicebio, Wuhan, China). After washing with acetic acid and water, they were placed in 0.1% gold chloride, followed by sodium thiosulphate solution. The sections were placed in absolute ethanol for 3 × 5 min and in xylene for 2 × 5 min to become transparent. Images were taken by an automatic slice scanning system (SV120, Olympus, Tokyo, Japan) and analyzed at 100 × magnification.
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10

Femur Histology and Bone Morphometry

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Femurs were collected after micro-CT
scanning, decalcified using 10% EDTA solution for 15 days, and then
embedded in paraffin. Samples were sectioned at 5–7 μm
and stained with HE or TRAP (#G1050-50T, Servicebio) according to
the manufacturer’s instructions. The primary antibodies anti-INOS
(1:100, #A14031, ABclonal), anti-Arg1(1:100, #A4923, ABclonal), anti-CD68
(1:100, #A6554, ABclonal), anti-TLR2 (1:50, #A11225, ABclonal), and
anti-BMAL1 (1:200, # ab3350, Abcam) were used for an immunofluorescence
assay. For MAR measurement, 25 mg/kg calcein (Aladdin, Shanghai, China)
and 50 mg/kg alizarin-3-methyliminodiacetic acid (A3882, Sigma)
dissolved in 2% sodium bicarbonate solution (Aladdin) were intraperitoneally
injected into mice 7 and 2 days prior to sacrificing the mice, respectively.
After overnight fixation with paraformaldehyde, dehydrated and undecalcified
femurs were embedded in methyl methacrylate and then underwent hard
tissue slicing (HistoCore AUTOCUT, Leica, Germany). Histology was
visualized using an automatic slice scanning system (SV120, Olympus,
Japan).
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