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4 protocols using atm s1981

1

Comprehensive Antibody Panel for DNA Damage Response

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Primary antibodies used were from Cell Signalling unless otherwise mentioned: β-actin (Abcam #ab6276), cleaved PARP (#5625), CDK1 Y15 (#9111), CHK1 (#2360), CHK1 S345 (#2348), H2AX (#7631), H2AX S139 (Millipore #05-636), H3 (#9715), H3 S10 (#3377), RRM2 (ABNOVA #H00006241-M01), ATR (Santa Cruz #1887), ATR T1989 (Gene Tex #GTX128145), CHK2 (#2662), CHK2 T68 (Abcam #3501), KAP1 (Abcam #10484), KAP1 S824 (Abcam #133440), DNA-PKcs (Abcam #70250), DNA-PKcs S2056 (Abcam #18192), ATM (Abcam #78), ATM S1981 (Abcam #81292), RPA32 (Abcam #2175), RPA32 S4/8 (Bethyl Laboratories #A300-245A), RPA32 S33 (Bethyl Laboratories #A300-246A).
For secondary antibodies, Alexa 488 (#4408, #4412) and Alexa 647 (#4410, #4414) from Cell Signalling were used in immunostaining. IRDye800-conjugated (#925-32210, #926-33210) and IR680-conjugated (#926-68070, #926-68021) antibodies from LICOR were used in immunoblotting.
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2

DNA Damage Response Protein Analysis

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Cells were harvested in UTB lysis buffer (9 M Urea, 75 mM Tris-HCl pH 7.5, 0.15 M β-mercaptoethanol). Blots were visualised using the Odyssey Infrared imaging system. Antibodies used were SETX, KAP1 (Bethyl); GRP78, HIF1α, (ΒD Biosciences); ATM-S1981, RPA-S4/8, β-Tubulin (Abcam); ATM, RPA, KAP1-S824, p53-S15, H3K9me2, H3K4me2, H3K9Ac, H3-S10, H3, H3K36me3, Chk1-S317, PERK (Cell Signaling); p53, β-actin, RNase H1, Chk1 (Santa Cruz); and H3K9me3, γH2AX, H2AX (Millipore).
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3

Immunofluorescence and Western Blot Antibodies

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The following antibodies were used in this study: ATM (catalog no. 2873; Cell Signaling Technology), ATM-S1981 (catalog no. ab81292; Abcam), CHK2 (catalog no. 05-649; Millipore), CHK2-T68 (catalog no. 2661; Cell Signaling Technology), eGFP (catalog no. ab6556; Abcam), γ-H2AX (catalog no. 05-636; Millipore), H2B (catalog no. 8135; Cell Signaling Technology), mCherry (catalog no. STJ34373; St. John’s Laboratory), Vinculin (catalog no. V9131; Sigma), 53BP1 (catalog no. Sc-22760; Santa Cruz), goat anti-mouse Alexa 488 conjugate (catalog no. A11031; ThermoFisher), goat anti-rabbit Alexa 568 conjugate (catalog no. A-11011; ThermoFisher), polyclonal goat anti-rabbit immunoglobulins HRP-conjugate (catalog no. P0448; Dako), and polyclonal goat anti-mouse immunoglobulins HRP-conjugated (catalog no. P0447; Dako).
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4

Antibody Sources and Dilutions

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The sources and dilutions of antibodies used were as follows: BrdU (Life Technologies), 53BP1 (polyclonal; Novus, Littleton, CO, USA), γH2AX (Upstate, Chicago, IL, USA); α-Tubulin, p53(S15), Chk2(T68), ATR(S428) (Cell Signalling, Danvers, MA, USA); ATM(S1981) (Abcam, Cambridge, MA, USA); p21 (Santa Cruz, Dallas, TX, USA).
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