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15 protocols using evo sem

1

Scanning Electron Microscopy of Bacterial Strain S3

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The general morphology of bacterial strain S3 was observed by routinely cultivating on DF-ACC agar medium at 28 °C for 24 h and furthermore, investigated by ZEISS EVO scanning electron microscope at Amity Institute of Renewable and Alternative Energy, Instrumentation facility, Noida, Uttar Pradesh, India. The bacterial strain was inoculated in LB broth medium for overnight incubation and then harvested by centrifugation at 2000 g for 5 min. The resultant cell pellet was washed twice with 0.05 M phosphate buffer (pH 7.3) and fixed with 1.5% glutaraldehyde at 4 °C for 24 h and subsequently, washed thrice with phosphate buffer solution. The cells were then dehydrated with graded series of ethanol (30–100%) at 15 min interval. Followed by drying to remove excess liquid, the dehydrated cells were mounted on a SEM stubs, coated with a layer of gold: palladium (60:40) and imaged using ZEISS EVO SEM and SEM micrographs were recorded.
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2

Cryogenic SEM Sample Preparation

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The samples were quickly frozen by immersing them into an open bath of liquid nitrogen at 77 K. The frozen samples were transferred to a preparation chamber (Leica model ACE600), subjected to an etching process (−90 °C for 7 min), and finally sputtered with a thin layer of gold. A scanning electron microscope (ZEISS EVO SEM, ZEISS, Oberkochen, Germany) was used to observe the samples, employing an accelerating voltage of less than 5 kV at −120 °C.
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3

Cryo-SEM Analysis of Emulsion Microstructure

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In order to observe the differences between the microstructure of the emulsions and the continuous phases, selected samples were characterized by Cryo-scanning electronic microscopy (Cryo-SEM). A scanning electron microscope Zeiss EVO SEM (Zeiss, Oberkochen, Germany) was used following the procedure described by Carmona et al. [29 (link)].
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4

Characterizing Iron Oxide Nanoparticles

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The morphology of both GS and CS FexOy-NPs, as well as their diameter distribution average, were measured by SEM with a Zeiss EVO SEM (Pleasanton, CA, USA) at 10 kV, recording images at different magnifications. The images were analyzed with ImageJ software (1.53q; National Institutes of Health, Bethesda, Maryland, USA) (free software) [54 (link)].
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5

Electrode Surface Morphology and Electrochemical Sensing

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Surface morphology of the working electrode of SPCE before and after fabrication was observed using a ZEISS EVO SEM (Germany) with SmartSEM software for visualization and image capture. The change in contact angle of the buffer drop on the working electrode to confirm each modification step during fabrication was recorded using a Rame‐Hart 290‐F4 goniometer (USA). DPV current changes were detected using PalmsSens4 potentiostat using PSTrace v5 desktop software and final serum samples were tested on a portable electrochemical Sensit Smart device using a smartphone PStouch v2.7 software (PalmSens, Netherlands). All experimentation was conducted at room temperature and repeated thrice unless stated otherwise. All biosafety and animal‐related protocols and procedures employed, carried out at National Institute of Animal Biotechnology (DBT‐NIAB), Hyderabad were reviewed and approved by the Institutional Biosafety Committee (IBSC) with approval number #IBSC/2019/NIAB/Sonu002 and Institutional Animal Ethics Committee (IAEC) with approval number IAEC/2019/NIAB/26/SG. The institutional and national guide for the care and use of laboratory animals was followed.
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6

Electron Microscopy Sample Preparation

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Samples were fixed with 0.1 M sodium cacodylate (Sigma), 2% gluteraldehyde (Electron Microscopy Sciences), 3% paraformaldehyde (Electron Microscopy Sciences), 5% sucrose buffer (Sigma) and 1% osmium tetroxide (pH 7.4) (Electron Microscopy Sciences). The samples were then dried in increasing concentrations of high-grade ethanol, followed by critical point drying using Autosamdri 815 critical point dryer and sputter coated using Cressington 208HR sputter coater with Au or Pt/Pd. Imaging was done on a Jeol 5600LV SEM, Zeiss EVO SEM, or Zeiss FESEM Ultra55 microscope.
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7

Multimodal Spectroscopic Analysis of Materials

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Raman spectroscopy and Fourier-transform infrared (FT-IR) spectroscopy were performed on Thermo Scientific-Nicolet 6700 Raman Spectroscope and iS50 FT-IR (Bangalore, India), respectively. Surface morphology was visualized via scanning electron microscopy (SEM), and elemental composition was analyzed via energy dispersive X-ray (EDX) on ZEISS EVO SEM coupled with SmartSEM software (Germany). Cyclic and differential pulse voltametric experiments were carried out on PalmSens4 potentiostat from PalmSens (The Netherlands).
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8

Cancer Cell Nanotube Ultrastructural Analysis

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Samples were fixed with 0.1 M sodium cacodylate (Sigma), 2% gluteraldehyde (Electron Microscopy Sciences), 3% PFA (Electron Microscopy Sciences), 5% sucrose buffer (Sigma) and 1% osmium tetroxide (pH 7.4) (Electron Microscopy Sciences). The samples were then dried in increasing concentrations of high-grade ethanol, followed by critical point drying using Autosamdri 815 critical point dryer and sputter coated using Cressington 208HR sputter coating with Au or Pt/Pd. Imaging was done on a Jeol 5600LV SEM, Zeiss EVO SEM or Zeiss FESEM Ultra55 microscope. For each image the total number of cancer cells, cancer cells with nanotubes, cancer cells without nanotubes, total number of nanotubes, total number of EPI–EPI membrane nanobridges, EPI–ENDO nanobridges, number of cells forming EPI–EPI nanobridges, EPI–ENDO nanobridges and number of cells positive for both EPI–EPI and EPI–ENDO nanobridges were counted. Length and width of the nanobridges were measured using the CarlZeiss TIF annotation editor. Width was measured at three different positions across the length of the nanobridges and the average width was calculated for the comparison of length and width of the nanobridges.
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9

Specimen Characterization by SEM and EDS

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Specimens
for Scanning electron microscopy (SEM) and energy-dispersive
spectroscopy (EDS) were prepared by gently dispersing the finely ground
powders onto standard carbon tape, ensuring optimal sample distribution.
The morphologies of the specimens were then characterized using a
Zeiss Auriga high-resolution SEM. Elemental analysis was carried out
with a Zeiss EVO SEM.
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10

Comprehensive Biochar Characterization

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Surface morphology and elemental compositions of the prepared biochar were investigated using a scanning electron microscopy (SEM) and an energy dispersive spectrometer (EDS) (Zeiss Evo-SEM). Renishaw inVia Raman spectrometer (Gloucestershire, UK) was used to analyse the Raman spectra of the produced biochar. The functional groups present in the biochar were determined by Fourier transform infrared (FTIR) spectrometer (Miracle-10, Shimadzu) in the 4000-400 cm -1 range. Brunauer-Emmett-Teller (BET) analyzer (Quantachrome Autosorb IQ, USA) was applied to determine the surface area and pore size distribution of the biochar via adsorption/desorption isotherm of nitrogen at 77 K. Before adsorption measurements were taken, degassing of the sample was conducted under vacuum at 473 K for 6 h. The surface charges of the materials at different pH values were analysed by a zeta potential analyzer (Malvern, Model ZEN3600) at the solution pH ranging from 1.0 to 10.0.
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