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12 protocols using anti β actin

1

Protein Expression Analysis via Western Blot

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Total protein was obtained using a Protein Extraction Kit (KeyGen BioTECH, Nanjing, China). SDS–PAGE separates proteins of different sizes and electroporates them onto PVDF membranes (Millipore, Bedford, MA, USA). Membranes were blocked with 5% skimmed milk and incubated with anti-ZO-1(ER41204), anti-Occludin(R1510-33), anti-Claudin 1(ER1906-37), anti-Cleaved caspase 3(ET1602-47), anti-Bax(ER0907), anti-Bcl-2(ER1802-97), anti-iNOS(ER1706-89), anti-Arg1(ET1605-8), anti-p-p38(ER2001-52), anti-p38(ET1602-26), anti-p-JNK(ET1609-42), anti-JNK(ET1601-28), anti-p-ERK1/2(ET1603-22), anti-ERK1/2(ET1601-29), and anti-β-actin(R1207-1) antibodies at 4°C overnight(HUABIO, Hangzhou, China). After being washed with Tris Buffered Saline with Tween20 (TBST), the membranes were incubated with secondary antibodies for 1 h. Protein bands were visualized with an enhanced chemiluminescence (ECL) assay kit (Biosharp, Hangzhou, China) and measured with ImageJ software (NIH, Bethesda, MD, USA).
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2

Western Blot Analysis of Protein Expression

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Proteins in individual samples were resolved on 10% or 12%
SDS–PAGE gels and transferred onto nitrocellulose membranes (Bio-Rad).
Following incubation with primary antibodies and HRP-conjugated secondary
antibodies, the membranes were developed with enhanced chemiluminescence
substrates (Thermo Fisher Scientific) in the XRS+ Gel documentation system
(Bio-Rad) with Image Lab Software (Bio-Rad). Antibodies used in this study are
anti-TANGO2 (Proteintech), anti-COX IV (Abcam), anti-GAPDH (Genetex, for yeast),
anti-GAPDH (Santa Cruz, for mammalian cells), anti-β-actin (Huabio) and
anti-Ctt1p (generated by the laboratory of A.R.R.).
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3

Antibody Characterization in Neurodegenerative Model

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The antibodies and compounds used were commercially obtained: anti-RPE65 antibody (Catalog No. ab13826, Abcam, Cambridge, MA), anti-RNF123 antibody (Catalog No. A09642-1, BOSTER, China), anti-RNF149 (Catalog No. bs-9228R, Bioss, China), anti-ubiquitin antibody (Catalog No. 3933, Cell Signaling Technology, Boston, MA), anti-β-Actin (Catalog No. EM21002, Huabio, China), D-galactose (D-gal, Catalog No. G0750, Sigma-Aldrich, St. Louis, MI), H2O2 (Catalog No. 323381, Sigma-Aldrich), DAPI (Catalog No. 9542, Sigma-Aldrich), and lutein (Catalog No. 07168, Sigma-Aldrich).
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4

Western Blot Analysis of Liver Signaling

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Liver samples or hepatocyes were lysed with RIPA peptide lysis buffer (Beyotime Biotechnology, Jiangsu, China) containing 1% protease inhibitors (Pierce) and Western blotting analysis were performed according to standard procedures. Primary antibodies were used as follows: anti‐Pknox1 (1:1000, Novus, USA), anti‐IR (1:1000; Abcam, Cambridge, UK), anti‐pY‐IRS1 (1:1000; Abcam), anti‐IRS1 (1:2000; Abcam), anti‐pS‐IRS1 (1:2000; Abcam), anti‐pY‐IRS1 (1:1000; Abcam), anti‐AKT (1:1000; Cell Signaling Technology, MA, USA), anti‐pY‐AKT (1:1000; Cell Signaling Technology), and anti‐β‐actin (1:3000, Huabio, China). Protein bands were developed using the Enhanced Chemiluminescence (ECL) system and were visualized by using the ChemiScope Western Blot Imaging System (Clinx Science Instruments Co., Ltd). The gray‐scale value assay was performed by using Image J software (Rawak Software, Inc. Germany).
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5

Western Blot Analysis of JNK Signaling in dusp2-/- Zebrafish

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AB and dusp2–/– larvae at 5 dpf were lysed with radio-immunoprecipitation assay buffer (Sangon, Shanghai, China). Total proteins were separated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis and transferred onto a polyvinylidene difluoride membrane. The membranes were probed with the following primary antibodies: anti-p-JNK1/2/3 (rabbit; 1:1000; Abmart, Shanghai, China; Cat# TA3320S), anti-JNK1/2/3 (rabbit; 1:1000; Abmart; Cat# T55490S) and anti-β-actin (rabbit; 1:1000; HuaBio, Huangzhou, China; Cat# ET1701-80) for 4 hours at 26°C. The membranes were then incubated with secondary anti-rabbit (goat; 1:5000; Proteintech, Chicago, IL, USA; Cat# SA00001-2) at 26°C for 2 hours. ImageJ software was used to calculate the integrated optical density values. The double-blind method was used to mitigate bias.
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6

Primer Sequences and Antibodies for qPCR and Western Blot

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The sequences of the primer pairs used in qPCR are as follows: Sag-Fwd: 5′-TG GAGGACGGCGAGGAAC-3′, Sag-Rev: 5′-CCCCAGACCACAACACAGTC-3′; Rbx1-Fwd: 5′-CTTTGTATCGAATGTCAGGC-3′, Rbx1-Rev: 5′-GTCACTAGACGAGTAACAG-3′; Ube2f-Fwd: 5′-GACTGTAAGCCCAGATGAG-3′, Ube2f-Rev: 5′-CCTTTAATGTTCTAGTGGG-3′; Ube2m-Fwd: 5’-CTGTCCTGATGAAGGCTTC-3′, Ube2m-Rev: 5′-GTTCGGCTCCAAGAAGAG-3′; Gapdh-Fwd: 5′-GCCGCCTGGAGAAACCTGCC-3′, Gapdh-Rev: 5′-GGTGGAAGAGTGGGAGTTGC-3′.
The antibodies used in western blot are as follows: anti-Ube2f, Proteintech, 17056-1-AP (dilution 1: 1000); and anti-β-Actin, HuaBio, M1210-2 (dilution 1: 5000).
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7

Zebrafish Hypothalamus Protein Analysis

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Protein extracts were sampled from the zebrafish hypothalamus and separated by 10% SDS-PAGE (ACE Biotechnology, China) and transferred onto a polyvinylidene fluoride (PVDF) membrane (Millipore, United States). The membranes were blocked with QuickBlock™ Blocking Buffer (Beyotime, China) at room temperature, and incubated with following the primary Abs overnight at 4°C: rabbit polyclonal anti-Gαq (ABclonal, China) and rabbit polyclonal anti-β-actin (HUABIO, China). The blots were detected with HRP-conjugated anti-rabbit IgG (1:2000) and visualized by an enhanced chemiluminescence (ECL) reagent (Beyotime, China).
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8

Western Blot Analysis of Protein Targets

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Total proteins were extracted using lysis buffer consisting of 2% sodium dodecyl sulfate (SDS), 1% Triton X-100, 50 mM Tris-HCl, and 150 mM NaCl (pH 7.5), separated by 10% SDS-PAGE, and transferred to a nitrocellulose membrane. The membrane was then blocked with 5% skim milk and incubated with primary antibodies at 4°C overnight. After hybridization with horseradish peroxidase (HRP)-conjugated secondary antibodies, the membrane was visualized using enhanced chemiluminescence (ECL) reagents (Bio-Rad, Hercules, CA, USA), and a Quantity One system (Bio-Rad, USA) was applied for analysis. The primary antibodies were anti-myc (Huabio, China), anti-TNFAIP3 (Proteintech, USA), anti-β-actin (Huabio, China), anti-caspase-3 (Cell Signaling Technology [CST], USA), anti-AGO2 (Abcam, USA), and anti-PDCoV N protein (Medgene Labs, USA), and the anti-PDCoV S protein polyclonal antibody was stored in our lab.
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9

Western Blot Analysis of NLRP3 and Caspase-1

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Cell or tissue lysate was resuspended in 5× SDS loading buffer, subsequently incubated at 100°C for 5 min and centrifuged at 12,000 × g for 10 min. Protein concentrations were detected using a BCA Protein Assay Kit (Thermo Fisher Scientific). A total of 20 μg of protein from the tissue or cell lysate was separated by SDS-PAGE gel (Thermo Fisher Scientific) and then transferred onto polyvinylidene difluoride (PVDF) membranes (Millipore). The membrane was blocked using 5% nonfat milk for 2 h at room temperature and then incubated with appropriate primary antibodies: anti-NLRP3 (Abclonal, Wuhan, China) (1 : 1,000) and anti-Caspase-1 (Abclonal, Wuhan, China) (1 : 1,000) in blocking buffer overnight at 4°C. Anti-β-actin (HuaBio, Shanghai, China) (1 : 2,000) was used as a loading control. After washing three times with PBST, the membranes were incubated with HRP-conjugated secondary antibodies for 1.5 h at room temperature. The bands were detected using an ECL kit (MultiSciences, Hangzhou, Zhejiang, China).
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10

Protein Expression Analysis of Cell Lysates

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Cell lysates were prepared using radioimmunoprecipitation assay (RIPA) buffer (Beyotime, China, P0013B). Total protein was quantified by BCA protein assay (Bio‐Rad, Berkery). Each sample was adjusted to equal amount of protein using 5X loading buffer for loading. The samples were separated by SDS‐PAGE, transferred to a polyvinylidene fluoride membrane, and immunoblotted with the following antibodies: GDF11 (DGDF80, R&D Systems,Emeryville, CA,USA), HGF (ab83760, Abcam, USA), VEGFR1 (ET1605‐11,Huabio,China), CD31 (#77699, Cell Signalling TechnologyBoston,MA, USA), VEGFR2 (#9698, following Abs are all from Cell Signalling Technology,USA), phospho‐p44/42 (Thr202/Try204 phospho‐ERK1/2,#4370), p44/42 MAPK (Erk1/2,#4696), BCL2 (#2827), BAX (#14796), Cleaved Caspase3 (#9661), phospho‐Smad2 (Ser465/Ser467,#18338), phospho‐Smad3 (Ser423/425, # 9520), Smad2(#5339), Smad3(#9523), anti‐β‐actin (#3700), EIF4E (R1512‐8,Huabio, China), Phospho‐eIF4E (S209) (ET1608‐66,Huabio, China) and VEGF ( ER30607,Huabio, China),at 4°C overnight. After incubation of the membranes with peroxidase‐conjugated secondary antibodies (Cell Signalling Technology,USA), bands were visualized using enhanced chemiluminescence reagents (Bio‐Rad,Los Angeles, CA,USA).
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