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13 protocols using mca409s

1

Western Blot Analysis of Mbp and Gapdh

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Western blot analysis was performed according to standard protocols. The NuPage® gel electrophoresis system (Invitrogen) was used according to the manufacturer's protocol. Primary antibodies: rat anti Mbp (Abd Serotec; MCA409S; 1:500) and mouse anti glyceraldehyde 3-phosphate dehydrogenase (Gapdh; Millipore; MAB374; 1:100000).
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2

Protein Quantification and Analysis of Sciatic Nerve Samples

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After removal of the perineurium, SNs were homogenized in microcentrifugation tubes (Eppendorf) using chilled pestles (Argos Technologies) in lysis buffer (2% SDS, 10 mM NaCl, 25 mM Tris-HCl pH 7.4, proteinase inhibitor cocktail (Sigma), phosphatase inhibitor (Roche)). Lysates were supplemented with sample buffer (6.2 mM Tris, 1% β-mercaptoethanol, 2% glycerol) and further processed using standard SDS-PAGE and western blot methods. The following antibodies were used: Notch1 (MAB5352, Millipore, 1:1,000), HES1 (ab71559, Abcam, 1:1,000), EGR2 (13491-1-AP, Proteintech, 1:1,000), E-cadherin (ALX-804-202-C100, Enzo, 1:1,000), HMGA2 (#8179, Cell Signalling, 1:1,000), β-actin (A5316, Sigma, 1:5,000), MBP (MCA409s, Serotec, 1:1,000). Secondary antibodies were obtained from Jackson and Promega. Signal detection was carried out using Fusion FX7 (Vilber Lourmat) and band intensities were quantified using Quantity One software (Biorad). Uncropped blots are shown in Supplementary Fig. 5. Size markers refer to All Blue Precision Protein Standards (Biorad).
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3

SDS-PAGE Analysis of Cellular Protein Expression

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For sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) cell lysates of CG4, CG4_venus, and CG4_wt-α-syn cells (n = 3 each) were extracted using RIPA buffer and 15 μg of proteins were loaded on a 4-12 % Novex® NuPAGE Bis-Tris-Mini gels (Invitrogen) and afterwards transferred on a polyvinylidene fluoride membrane (Immobilon PVDF-FL, 0.45 μm; Millipore). Membranes were blocked (PBS containing 0.1 % Tween-20 and 1 % BSA) for 1 h at RT and incubated in primary antibodies diluted in 0.1 % sodium azide, 0.1 % Tween 20, and 1 % BSA in PBS overnight at 4°C: monoclonal rat anti-MBP (1:200; MCA409S; AbD Serotec), monoclonal mouse anti-GAPDH (1:100.000; clone GB-69; Sigma), and monoclonal anti-CNPase (1:1000; clone 11-5B; Millipore) were detected with respective secondary antibodies diluted in blocking buffer (1 h at RT): donkey anti-mouse 488 (1:3000), donkey anti-rat 488 (1:3000), and donkey anti-mouse 647 (1:1000; all Invitrogen). Fluorescent signals were captured using a Fusion FX7 detection system (Peqlab). Results were quantified using Bio1D software (Vilber Lourmat) and normalized to GAPDH.
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4

Protein Extraction and Western Blot Analysis

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Extracts of soluble proteins in RIPA buffer from mouse cerebella or human cerebellar cortex were obtained using an established protocol31 (link). Lysates from soluble protein fractions were resolved on 10% SDS-PAGE gels, and corresponding PVDF membranes were incubated overnight at 4°C with primary antibodies: rat anti-MBP (1:1000; MCA409S, AbDSerotec), mouse anti-160kD NFL (1:1000; ab7794, Abcam), rabbit anti-α-tubulin (1:5000; 2144S, Cell Signaling), mouse anti-GAPDH (1:10000; MAB374, Millipore), and rabbit anti-MJD (1:20000). Bound primary antibodies were visualized by peroxidase-conjugated anti-rat, anti-mouse or anti-rabbit secondary antibodies (1:10000; Jackson Immuno Research Laboratories) followed by treatment with ECL-plus reagent (PerkinElmer) and exposure to autoradiography films. Band intensity was quantified by densitometry using ImageJ.
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5

Antibody Immunohistochemistry Protocol

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The following antibodies were obtained commercially: HCN2 (1:1000; catalog #APC-030, Alomone Labs); CNPase (1:2000; catalog #AMAb91072, Atlas); myelin basic protein (MBP; 1:250; catalog #MCA409S, Serotec); Olig2 (1:100; catalog #AB9610, Millipore); CC1 (1:300; catalog #ab16794, Abcam); MAG (1:100; catalog #MAB1567, Sigma-Aldrich); and CASPR (1:100; catalog #ab34151, Abcam). The Sox10 antibody was a gift from M. Wegner (University of Erlangen, Erlangen, Germany (1:5000).
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6

Characterization of Cerebellar Proteins

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Total proteins from mouse cerebella or human cerebellar cortex were obtained by lysis in RIPA buffer containing protease inhibitors (Complete, Roche Diagnostics), followed by sonication and centrifugation using an established protocol in the laboratory 31 . Supernatants (soluble protein fractions) were collected and total protein concentration was determined using the BCA method (Pierce). Total protein lysates from soluble fractions were resolved on 10% SDS-PAGE gels, and corresponding PVDF membranes were incubated overnight at 4 ºC with primary antibodies: rat anti-myelin basic protein (MBP) (1:1000; MCA409S, AbD Serotec), mouse anti-160 kD neurofilament medium (NFL) (1:1000; ab7794, Abcam), rabbit anti-α-tubulin (1:5000; 2144S, Cell Signaling), mouse anti-GAPDH (1:10000; MAB374, Millipore), and rabbit anti-MJD (1:20000). Bound primary antibodies were visualized by incubation with a peroxidaseconjugated anti-rat, anti-mouse or anti-rabbit secondary antibody (1:10000; Jackson Immuno Research Laboratories) followed by treatment with ECL-plus reagent (Western Lighting, PerkinElmer) and exposure to autoradiography films. Band intensity was quantified by densitometry using ImageJ.
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7

Quantitative Western Blot of Myelin

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After perfusion with saline, mouse brains were homogenized and solubilized in 60 mM n-octyl-β-d-glucoside-containing lysis buffer, followed by centrifugation to remove debris. After bicinchoninic acid assay measurement of protein content, lysates were processed by SDS-PAGE followed by western blotting. The primary antibodies used were rat anti-MBP (MCA409S, Bio-Rad, Hercules, CA) and mouse anti-glyceraldehyde 3-phosphate dehydrogenase (GAPDH) (AM4300, Thermo Fisher Scientific, Waltham, MA). Secondary antibodies used were horseradish peroxidase–conjugated anti-rabbit, anti-rat, or anti-mouse IgG.
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8

Visualizing Myelination in Cortical Slices

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Cortical slices were washed once with 1x PBS before they were fixed with 4% paraformaldehyde (PFA) (Sigma-Aldrich, Cat# 16005, USA) in PBS for 1 h at RT. The slices were subsequently rinsed in 1x PBS and blocked in 3% Horse Serum (Gibco, Cat# 26050088), 2% BSA, (PanReac AppliChem, Cat# A1391, Germany), and 0.5% Triton X-100 in 1x PBS for 2 h at RT. Following blocking, the slices were incubated for 48 h with primary antibodies at 4°C. The slices were then washed 3 times for 30 min with blocking solution and incubated with 4′,6-diamidino-2-phenylindole (DAPI) (1:1,500, Invitrogen, Cat# MP01306, USA) and the appropriate secondary antibodies overnight at 4°C. The slices were washed again 3 times with blocking solution for 30 min and finally mounted on a glass microscope slide using mounting medium containing Mowiol® 4-88 Reagent (Millipore, Cat# 475904, Germany). The primary antibodies used were as follows: against myelin basic protein (rat monoclonal anti-MBP, MCA409S, BioRad, 1:300, USA), Neurofilament-H (chicken anti-NF200, Abcam, Cat# ab4680 1:10,000, UK). Secondary antibodies were all purchased from Life Technologies (Life Technologies, 1:1,000, USA). Images were obtained using confocal laser scanning microscopy (Leica microsystems, TCS SP8, Germany) and processed using Fiji image processing package.1
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9

Immunofluorescent Labeling of Myelin Basic Protein

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Mice were transcardially perfused with 4% paraformaldehyde. The spinal cords were removed, postfixed overnight, and cut into 100-μm coronal and sagittal sections using a vibratome (Leica Microsysteme, Rueil-Malmaison, France). Immunofluorescent labeling was performed on sections fixed with paraformaldehyde 4%. The following antibody was used: anti-MBP (rat, 1/500; BioRad MCA409S, CA, United States). The sections and cells were incubated with appropriate Alexa-conjugated secondary antibodies and then counterstained with Hoechst 33258 (1/1,000; Sigma-Aldrich, St. Louis, MI, United States).
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10

Immunofluorescence staining of myelinating cultures

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Myelinating cultures were fixed directly in 4% paraformaldehyde for 10 minutes at room temperature (RT), or by the addition of 1:1 v/v 8% paraformaldehyde at 37°C to cell culture media, then washed in PBS and permeabilised in methanol for 10 minutes at −20°C (Caspr1 and MBP) or 0.5% triton X for 10 minutes at room temperature (CNP, PLP and beta tubulin IV) and washed with PBS. Cultures were blocked for 1 hour with 10% goat serum in PBS or 1% BSA/10% goat serum/0.1% Tween‐20 in PBS with 0.018 g/ml NaCl, at RT. Primary antibodies were rabbit anti‐Caspr1(1:1000; kindly provided by Professor E Peles), rat anti‐MBP (1:400, MCA409S; Bio‐Rad), mouse anti‐β tubulin 4 (1:200; ab11315; Abcam), rabbit anti PLP/DM20 (kindly gifted by Professor Nigel Groome) or mouse anti‐CNP (1 in 400–800; ab6319; Abcam) diluted in blocking buffer and incubated overnight at 4°C. Bound antibodies were detected using Alexa 568, 488 or 647 goat anti‐rabbit IgG, mouse IgG1 or rat IgG (1:1000; A21244; Thermo Fisher) by incubation for 1 hour at RT. Following careful washing in PBS and rinsing briefly in water, coverslips were mounted on glass slides in Mowiol containing DAPI (2 µg/ml).
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