The largest database of trusted experimental protocols

9 protocols using ab4830

1

Western Blot Analysis of PC9 Cell Lines

Check if the same lab product or an alternative is used in the 5 most similar protocols
Stably transfected PC9 cells and PC9/GR cells were seeded in 6-well plates at 3 × 105 cells/well and cultured for 48 h. The cells were lysed in RIPA buffer containing 1% PMSF. A BCA protein kit (PC0020; Beijing Solabo) was used to determine the protein concentration. The protein extracts were separated by 10% SDS-PAGE, transferred onto PVDF membranes (ISEQ00010; Millipore, USA) and then probed with specific antibodies against FGL1 (ab197357; Abcam, USA), EGFR (26,462,646; Cell Signaling Technology, USA), p-EGFR Y1173 (ab5644; Abcam), p-EGFR Y1068 (ab5644; Abcam), PARP1 (ab4830; Abcam), caspase 3 (ab13847; Abcam), and β-actin (60008–1-Ig; Proteintech, Wuhan, China). After incubation with HRP-coupled secondary antibody, the protein bands were detected in an ECL Advance Detection System (Amersham Biosciences, USA) using a SuperSignal West Femto Tril Kit (34,094; Thermo USA). The gray-scale value of all bands was analyzed using the ImageJ software.
+ Open protocol
+ Expand
2

Protein Expression Analysis Using Western Blot

Check if the same lab product or an alternative is used in the 5 most similar protocols
The samples were submitted for lysis and the total protein contents were estimated protein estimation kit (ThermoFisher, USA). The obtained lysates were centrifuged and submitted for gel electrophoresis on a SDS-PAGE and then loaded to PVDF membranes. The resultant PVDF membranes were blocked for 4 hours using 5% skim milk and then incubated using Iry antibodies for 12 hours at 4°C, followed by addition of horseradish peroxidase labeled IIry antibodies. The proteins were observed using the enhanced chemiluminescence technique. For the experiment the Iry antibodies used were anti-cleaved PARP1 (1:1000) (ab4830), anti–cleaved caspase 3 (1:1000) (ab2302), anti-TCF4 (1:1000) (ab185736) from Abcam, USA. Anti-MMP-3 (1:1000) (ThermoFisher USA), Anti-MMP-13 (1:1000) (#94808) (Cell Signaling USA), Anti-Collagen II antibody (1:1000) (ab34712) (Abcam USA), Anti-aggrecan antibody (1:1000) [6-B-4] (ab3778) (Abcam, USA). For the study Actin was used as loading control.
+ Open protocol
+ Expand
3

Analyzing Protein Expression After ASO Transfection

Check if the same lab product or an alternative is used in the 5 most similar protocols
Following 36 h of siRNA transfection, cells were then re-seeded in 10 cm dishes at ∼70% confluency and left to grow overnight in a 37°C incubator with 5% CO2. The following morning, safe and toxic ASOs were transfected at 80 nM into cells for 8 h using Lipofectamine 2000 (Life Technologies). Cells were washed with cold 1 × PBS and collected using a cell scraper. Cell lysate was prepared using RIPA buffer (ThermoFisher) and cleared by centrifugation at 10,000 g for 20 min at 4°C. Proteins (40 μg/lane) were separated by 4%–12% SDS-PAGE and transferred to membrane. Interested proteins were detected with specific antibodies, and visualized using ECL.
The following antibodies were purchased from Abcam: NAT10 (ab194297), DDX21 (ab182156), NPM1 (ab10530), NCL (ab134164), acetylated alpha-tubulin (ab24610), and cleaved PARP1 (ab4830). PSF (sc-374502) and P54 (sc-376865) antibodies were from Santa Cruz Biotechnology. The RNase H1 antibody (15606-I-AP) was obtained from ProteinTech. Quantification of proteins detected in Western blot was performed using ImageJ and normalized to the levels of GAPDH detected from the same blot using the GAPDH antibody (G9545; Sigma Aldrich). Anti-rabbit secondary antibody conjugated to HRP (170-6515) and anti-mouse secondary antibody conjugated to HRP (170-6516) were purchased from Bio-Rad.
+ Open protocol
+ Expand
4

Western Blot Analysis of Apoptosis and Cell Signaling

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cell protein was collected by RIPA lysis buffer (KeyGEN, Nanjing, China) containing 1 nM PMSF (Biotool, Houston, TX, USA). 20 μg protein per well was electrophorsed in 10% SDS-PAGE gels and then transferred to polyvinylidene difluoride membranes (Millipore, Bedford, MA, USA), and incubated with different primary antibodies, including GALNT3 (16716–1-AP, Proteintech, China), caspase3 (ab13847, Abcam, the UK), cleaved caspase3 (ab13585, Abcam, the UK), PARP (ab74290, Abcam, the UK), cleaved PARP (ab4830, Abcam, the UK), MUC1 (ab15481, Abcam, the UK), PI3K-p110α (21890–1-AP, Proteintech, China), p-AKT 308 (AP3743a, Abgent, China), p-AKT 473 (AP3434a, Abgent, China), AKT (ab8805, Abcam, the UK), NF-κB (AP50006, Abgent, China) and GAPDH (AP7873a, Abgent, China), at 4 °C overnight. The membrane was treated with anti-rabbit IgG at 37 °C for 2 h. All bands were detected by an ECL Western blot kit (Thermo Fisher Scientific, USA) and analyzed by Lab Works (TM ver4.6, UVP, Bio Imaging Systems, NY, USA). GAPDH was used as control.
+ Open protocol
+ Expand
5

Molecular Characterization of Ovarian Cell Lines

Check if the same lab product or an alternative is used in the 5 most similar protocols
Western blotting was performed in tissue samples or cultured cells as indicated. The cells were lysed in buffer containing 1% NP40, 50 mM Tris, 5 mM EDTA, 1% sodium deoxycholate, 1% SDS, 1% Triton X-100, 10 mg/mL aprotinin, 1 mM PMSF, and 1 mg/mL leupeptin (pH = 7.5), supernatants were collected after spin and protein was measured by Bradford assay (Thermo, Waltham, MA, USA). Forty micrograms total proteins were resolved on SDS-PAGE. Following an electric transfer onto PVDF membranes, the blots with proteins were then blocked by 5% bovine serum albumin and incubated with appropriate primary antibodies at 4 °C overnight. The membranes were incubated by HRP conjugated secondary antibody, and signals were visualized by an enhanced ECL-based imaging system. The caspase 3 detected was active caspase 3. Antibodies used in the study include anti-FOXD3 antibody (ab178512, Abcam, USA), anti-beta Actin antibody (ab8227, Abcam), anti-Annexin A2 antibody (ab41803, Abcam), anti-Cleaved PARP1 antibody (ab4830, Abcam), anti-Casepase-3 antibody (ab13847, Abcam), and anti-GAPDH antibody (ab9484, Abcam). The graphs shown the representative images from three independent experiments. The results were compared with normal human ovarian cell line HOSE.
+ Open protocol
+ Expand
6

Western Blotting and Immunofluorescence for Vascular Smooth Muscle Cell Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
For Western blotting, protein concentrations in VSMC lysates were quantitated using a BCA Protein Assay Kit (Thermo Fisher Scientific, No. 23225). Proteins (30 μg) were separated through 15% SDS/PAGE and then transferred on to PVDF membranes (Millipore). After 1 h incubation in 5% non-fat milk at room temperature, the blots were further incubated with primary antibodies overnight at 4°C. The primary antibodies used were: anti-Cyclin D1 (Abcam, ab134175), anti-Cyclin E (Abcam, ab33911), anti-cyclin-dependent kinase (CDK) 2 (CDK2) (Abcam, ab32147), anti-CDK4 (Abcam, ab108357), anti-Rb (phospho S807) (Abcam, ab184796), anti-β actin (HC-101-02), anti-active caspase3 (Abcam, ab2302), anti-cleaved poly ADP-ribose polymerase (PARP) (Abcam, ab4830), anti-α-SMA (Abcam, ab32575), anti-SM22α (Abcam, ab14106), anti-Calponin (Abcam, ab46794), anti-Osteopontin (Abcam, ab8448), anti-smoothelin (Abcam, ab21108), and anti-tropomyosin (Abcam, ab181085).
For immunofluorescence, VSMCs were incubated in primary antibodies against α-SMA (Abcam, ab32575) or calponin (Abcam, ab46794).
+ Open protocol
+ Expand
7

Investigating Protein Signaling Pathways

Check if the same lab product or an alternative is used in the 5 most similar protocols
The transfected TPC-1 and CAL62 were lysed with RIPA buffer (Ding Guo Chang Sheng Biotech, Beijing, China) for 30 min on ice. Following centrifugation at 12,000×g, the concentrations of the cell lysates were measured with a Pierce BCA Protein Assay Kit (Thermo Fisher Scientific). The cell lysates (30 µg) were analyzed with SDS-PAGE, and electro-transferred onto the PVDF membrane (Thermo Fisher Scientific). The primary antibodies, including anti-LATS1 (ab70561) and anti-p-LATS1 (ab111344) (1:1,500; Abcam); anti-YAP (ab52771) and anti-p-YAP (ab62751) (1:2,000; Abcam); anti-LMO3 (ab230490), anti-LIMK1 (ab39641), and anti-p-LIMK1 (ab194798) (1:2,500; Abcam); anti-Bcl-2 (ab194583) and anti-β-actin (ab8227) (1:3,000; Abcam); anti-cleaved caspase-3 (ab2302) and anti-cleaved PARP (ab4830) (1:3,500; Abcam); anti-cofilin (ab42824) and anti-p-cofilin (ab12866) (1:4,000; Abcam); anti-β-catenin (ab6302), anti-β-tubulin (ab6046), and anti-Histone H3 (ab18521) (1:4,500; Abcam); were used to probe the membranes that were blocked with 5% bovine serum albumin. The membranes were incubated with horseradish peroxidase-conjugated immunoglobulin G (ab6721) (1:6,000; Abcam), and the blots were detected by enhanced chemiluminescence (KeyGen, Nanjin, China).
+ Open protocol
+ Expand
8

Immunohistochemical Analysis of Cell Markers

Check if the same lab product or an alternative is used in the 5 most similar protocols
Immunohistochemical analysis was performed as previously described.58 (link), 68 (link) Antibodies were: anti-cleaved PARP (ab4830; 1:50), anti-c-Fos (ab7963; 1:50), anti-c-Jun (ab31419; 1:50), anti-AcH3 (ab1791; 1:200) from Abcam and anti-NTPdase2 (1:100).69 (link) Secondary antibodies were purchased from Jackson ImmunoResearch (West Grove, PA, USA). Some experiments were performed with anti-c-Fos that had a fluorophore directly attached using the Mix-n-Stain CF Dye antibody labeling kit (Biotium, Hayward, CA, USA). The images were taken via LSCM and we have used single optical section to demonstrate double labeling as well as for cell counting analyses. Identical settings for laser intensity and brightness/contrast were used for comparative analysis between sections.
+ Open protocol
+ Expand
9

MTT and Cisplatin Cytotoxicity Assay

Check if the same lab product or an alternative is used in the 5 most similar protocols
In this study, 3-(4,5-Dimethyl-2-thiazolyl)-2,5-diphenyl-2H-tetrazolium bromide (MTT) and cisplatin were purchased from Alfa and used as received. FITC Annexin V Appoptosis Detection Kit I was purchased from BD Pharmingen™ (Lake Franklin, NJ, USA). Reactive oxygen species assay kit and mitochondrial membrane potential assay kit with JC-1 were obtained from Beyotime. β-Actin (CST, 13E5, #4970), Cyclin B1 (CST, D5C10, #12231), Caspase 3 (CST, D3R6Y, #14220), Cl-PARP1 (Abcam, ab4830), Cl-caspase 3 (Abcam, ab32042), Caspase 9 (Abcam, ab202068), and phospho-CDC2/CDK1 (R&D,Y15) were used as primary antibodies and prepared by 1:1000. HRP AffiniPure Goat Anti-Rabbit (BOSTER) was used as a secondary antibody. CST (Cell Signaling Technology, Danvers, MA, USA).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!