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9 protocols using anti tau1

1

Immunofluorescence Staining Antibody Protocol

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The purified polyclonal antibody against SNPH residues 225–428 was described previously (Kang et al., 2008 (link)). Sources of other antibodies or reagents are as follows: anti–βIII-tubulin, anti-MAP2, anti–Tau-1, anti-dynein IC74, and anti–GAP-43 were from EMD Millipore; anti–cytochrome c was from BD; anti-TOM20 was from Santa Cruz Biotechnology, Inc.; anti-Miro1/2 (HPA010687) and anti-Trak2 were from Sigma-Aldrich; ECL-HRP–linked secondary antibodies were from GE Healthcare; and Alexa Fluor 546– or Alexa Fluor 488–conjugated secondary antibodies were from Invitrogen.
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2

Antibody Characterization for Cellular Pathways

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The following antibodies were used in this study: anti-SARA [mouse, sc-133071; 1:200 for immunoblotting and 1:100 for immunofluorescence (IF)], anti-PP1c (mouse, sc-7482; 1:50 for IF), anti-GADD34 (mouse, sc-373815; 1:50 for IF), anti-TβRI (mouse, sc-101574; 1:100 for IF) and anti-Smad2/3 (mouse, sc-398844; 1:100 for IF); all these antibodies were purchased from Santa Cruz Biotechnology (Dallas, Texas, United States). The antibody anti-MAP2 (rabbit, 1:500) and anti-Tau-1 (mouse, 1:500) were from Merck Millipore (Darmstadt, Germany). Antibody anti-pSamd2/3 (rabbit, s465/s467, E8F3R, 1:50 for IF) was from Cell Signaling (Danvers, MA, United States) and anti-phospho TβRI (rabbit, ser165, Lot: DY1241; 1:50 for IF) was acquired from Elabscience (Houston, Texas, United Sates).
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3

Immunostaining of Axons and Dendrites

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The immunostaining procedure was conducted using a modified version of a method described in our previous research17 (link),19 (link). For immunostaining of axons, Anti-Tau-1 (Sigma-Aldrich) was used as the primary antibody and goat anti-mouse IgG2a cross-adsorbed secondary antibody, Alexa Fluor 555 (Thermo Fisher Scientific, Waltham, MA, USA) was used as the secondary antibody. For immunostaining of dendrites, Anti-MAP2 mouse monoclonal IgG1 (Sigma Aldrich) was used as the primary antibody and rabbit anti-goat IgG cross-adsorbed secondary antibody, Alexa Fluor 488 (Thermo Fisher Scientific) was also used as the secondary antibody. The fluorescent images were recorded with a cooled charge-coupled-device camera imaging system (ORCA-ER, Hamamatsu Photonics).
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4

Immunohistochemical Analysis of Mouse Brain

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Mice brains at the end of experiments were isolated for post fixation overnight in the 4% paraformaldehyde at 4 °C and embedded in paraffin. Five-micrometer-thick coronal sections were deparaffinized followed by epitope retrieval with citrate buffer. After treating with 3% H2O2, primary antibodies were incubated for overnight at 4 °C. Immunostaining was performed by liquid DAB-substrate-chromogen system (DAKO,Cat. K3467, Santa Clare, CA, USA) for 10 min and counterstain with hematoxylin (Sigma-Aldrich, Cat. GHS316, Burlington, MA, USA) for 10 s. Slides were stained with anti-Tau1 (Sigma-Aldrich, Cat. MAB3420, Burlington, MA, USA), anti-MAP2 (Abcam, Cat. ab5392), anti-synapsin (Abcam, Cat. ab64581, Cambridge, UK), and anti-ki-67 (Abcam, Cat. ab15580, Cambridge, UK) antibodies.
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5

Immunostaining of Cultured Neurons

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Cultured neurons were fixed in 4% PFA/4% sucrose, permeabilized with 0.1 M PBS containing 0.1% Triton X-100 for 10 min, and blocked for 1 hour with 1% bovine serum albumin in PBS at room temperature. Similarly, they were incubated with primary antibodies overnight at 4 °C and secondary antibodies for 1 hour at room temperature. Primary antibodies include anti-Tau1 (1:200; Millipore), anti-TuJ1 (1:500; Millipore and Abcam) and anti-MAP2 (1:500; Millipore).
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6

Linx Protein Expression and Antibody Analysis

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cDNA encoding mouse Linx (clone 6826287, GenBank accession number BC096531) was purchased from Open Biosystems and subcloned into pcDNA3.1 (Invitrogen) and pRetroQ (Clontech) vectors to fuse Linx with the V5 and SF tag, respectively. GFP-Rho-kinase cDNA was provided by M. Amano and K. Kaibuchi (Nagoya University). The following antibodies were used in this study; anti-Linx (Islr2; R&D Systems), anti-Linx (Islr2; Abnova), anti-Ret51 (IBL, Gumma, Japan), β-actin (Sigma), anti-Tau-1 (Millipore), anti-TrkA (Cell Signaling Technology), anti-phospho-MLC (Ser19; Cell Signaling Technology), anti-MLC (Cell Signaling Technology), anti-Rho-kinase 2 (ROCK2, Abcam), anti-L1 (Millipore), anti-E-cadherin (Cell Signaling Technology), anti-Na+/K+-ATPase (Abcam), and anti-GFP (MBL, Nagoya, Japan).
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7

Immunostaining Protocol for Axonal Outgrowth Analysis

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After 48 h exposure to LA, 13-HODE or PGE2, cultures were fixed with 4% paraformaldehyde (Sigma-Aldrich) in phosphate-buffered saline (PBS) for 45 min, rinsed 3 times with PBS for 5 min and permeabilized with 0.5% Triton X-100 (Sigma-Aldrich) in PBS for 5 min. Permeabilized cells were blocked in 5% bovine serum albumin (BSA, Sigma-Aldrich) in PBS for 1 h. Cells were then incubated overnight at 4 °C with the primary antibody anti-Tau1 (Millipore, Billerica, MA, USA) diluted 1/1000 in 5% BSA in PBS to selectively label axons. Cultures were washed 3 times with PBS and incubated for 1 h at room temperature with secondary antibody, fluorescein goat anti-mouse IgG (Invitrogen, Thermo Fisher Scientific) diluted 1:1000 in 5% BSA in PBS. Slides were mounted in Invitrogen Prolong Gold Antifade Reagent with DAPI (Invitrogen, Thermo Fisher Scientific) and images of immunostained neurons were captured from 4 separate dissection in an unbiased fashion using an automated high content imaging system (ImageXpress, Molecular Devices) (Dragunow 2008 (link)). Automated image analysis of axonal outgrowth utilized a cell scoring journal in MetaXpress software (Molecular Devices, version 5.3.0.5).
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8

Immunolabeling of Neuronal Markers

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Neurons were fixed in 4% PFA, then coverslips were treated for 10 min with 50 mM NH4Cl and incubated in blocking buffer (0.22% gelatin, 0.1% Triton X-100 in PBS) for 30 min, before incubation with primary antibodies for 1 h at room temperature in blocking buffer. For CB1R staining, neurons were incubated for 30 min at 37°C with anti-CB1R antibody, then rinsed three times and fixed to continue the procedure with other antibody staining. The primary antibodies used were: chicken anti-MAP2 (1:10,000, Abcam), mouse anti-ankyrinG (1:100) from NeuroMab, anti-Tau-1 from Millipore (1:1000) and rabbit anti-CB1R (1:50) from Cayman (Cat. 101500). The secondary antibodies used were a donkey anti-mouse, anti-rabbit or anti-chicken Alexa-Fluor 488, 594, or 647 (1:1000). Phalloidin Alexa-Fluor 594 was used at a concentration of 1:100. Nuclei were stained using 4′,6-diamidino-2-phenylindole, and coverslips were mounted in Fluoromount G. Images were acquired on a vertical Axioskop-2 plus microscope (Zeiss) or a Leica SP5 confocal microscope under the same conditions to compare intensities. Figures were prepared for presentation using the Adobe CS4 software.
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9

Embryo Collection and Spinal Cord Processing

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For the collection of embryos, C57Bl/6 females were bred with Hb9 V5-PFN1C71GWt/Tg males, using a timed mating protocol, where the time of plug check was considered to be E0.5. Pregnant females were euthanized by cervical dislocation at the appropriate timepoint. Embryos were harvested and immersion fixed in ice-cold 4% paraformaldehyde (PFA) for 90–120 min. Adult mice were anesthetized and transcardially perfused with ice-cold 1× phosphate-buffered saline (PBS). Brains were collected and fixed overnight in 4% PFA at 4°C.
The tissues were processed with an ethanol and xylene gradient in an Excelsior tissue processor (Thermo). Whole embryos were embedded in paraffin blocks. Spinal cords were cut into 2 mm segments and embedded into paraffin blocks with cervical to sacral sections arranged in a grid-like pattern. Samples were sectioned with a 5 μm thickness on a microtome (Leica). Sections were rehydrated and stained as previously described (Ittner et al., 2016 (link)). Antibodies used in this study were: anti-ChAT (Millipore), anti-profilin 1 (Abcam), anti-tau1 (Millipore), anti-TDP-43 (Proteintech) and anti-V5 (Invitrogen, Carlsbad, CA, USA).
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