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8 protocols using anti immunoglobulin g anti igg

1

Argonaute-2 RIP Assay for circRNA

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RIP assay was conducted using Magna RIPTM RNA Binding Protein Immunoprecipitation Kit (Millipore, Bedford, MA, USA). Transfected SNU-387 and Huh7 cells were lysed in RIP buffer and cell lysates were maintained with magnetic beads conjugated with Anti-Argonaute2 (Anti-Ago2; Abcam) or Anti-immunoglobulin G (Anti-IgG; Abcam). Then, the samples were interacted with proteinase K (Solarbio) and immunoprecipitated RNAs were isolated. The RNAs were extracted and the levels of circ_0000517 and miR-1296-5p were measured via qRT-PCR.
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2

Argonaute-2 RNA Immunoprecipitation

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The RIP assay was performed using an EZ-Magna RIP Kit (EMD Millipore) according to the manufacturer's instructions. NP cell lysates were lysed with RIPA buffer (Beyotime Institute of Biotechnology) for 5 min at 4°C. Antibodies including anti-Argonaute 2 (anti-Ago2; cat. no. ab186733; 1:50; Abcam) and anti-Immunoglobulin G (anti-IgG; cat. no. 12-370; 1:100; EMD Millipore) were incubated with protein A/G magnetic beads (Pierce; Thermo Fisher Scientific, Inc.) for 1 h at 4°C. Then, cell lysate was mixed with the beads to incubate for 4 h at 4°C. Beads were washed twice using PBS buffer (Sangon Biotech Co., Ltd.), and the mixture was centrifuged at 2,500 × g for 10 min at 4°C. RNA was purified with 150 µl proteinase K buffer (Roche Diagnostics) and extracted using TRIzol (Invitrogen; Thermo Fisher Scientific, Inc.), and the immunoprecipitated RNA was detected via RT-qPCR as aforementioned.
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3

RIP Assay for circ_0000463-miR-924 Interaction

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A Magna RNA immunoprecipitation kit (Millipore) was adopted for RIP assay to confirm the associated relation between circ_0000463 and miR‐924. NSCLC cells were introduced with miR‐924 mimics for 48 h and then cells were disrupted using ice‐cold radio‐Immunoprecipitation Assay (RIPA) lysis buffer. Cell extracts were mixed with anti‐Argonaute 2 (Anti‐Ago2; Abcam) or anti‐Immunoglobulin G (Anti‐IgG; Abcam) for 4 h at 4℃. Then, the magnetic protein A/G beads were added to incubate for 2 h. Beads were washed with PBS thrice, and RT‐qPCR was applied to measure RNA enrichment.
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4

Confirming circRNF111-miR-27a-3p Interaction

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The Magna RIP RNA-binding Protein Immunoprecipitation Kit (Millipore, Bedford, MA, USA) was adopted to confirm the relationship between circRNF111 and miR-27a-3p. Cells were briefly lysed in RIP buffer and incubated with magnetic beads, which were conjugated with anti-Argonaute2 (anti-Ago2; Abcam) or anti-immunoglobulin G (anti-IgG; Abcam). Next, proteinase K (Solarbio) was added to digest the protein, and the RNA in the immunoprecipitated product was extracted. Finally, the co-precipitated circRNF111 and miR-27a-3p was detected by real-time qPCR after reverse transcription.
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5

Confirming miR-199b-5p and circZNF124 Interaction

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The interaction between miR‐199b‐5p and circZNF124 or SLC7A5 was confirmed using a Magna RIP kit (Millipore). Briefly, the cultured HEC1A and Ishikawa cells were lysed with RIP lysis buffer (Millipore). The lysates were incubated with the magnetic beads coated with anti‐argonaute2 (anti‐Ago2; Abcam, Cambridge, UK) and anti‐immunoglobulin G (anti‐IgG; Abcam), respectively. After the beads were washed, both circZNF124 and miR‐199b‐5p enrichment in co‐precipitated RNAs were detected by qRT‐PCR.
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6

Argonaute-2 Immunoprecipitation for circRNA

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RIP experiment was conducted utilizing the Magna RIP RNA-Binding Protein Immunoprecipitation Kit (Millipore, Billerica, MA, USA). Briefly, A549 and H1299 cells were diluted in RIP buffer and maintained with Anti-Immunoglobulin G (Anti-IgG) or Anti-argonaute 2 (Anti-Ago2) (Abcam, Cambridge, MA, USA; Anti-Ago2 was used to detect Ago2, and then Ago2-RIP could be used to analyze the amount of circRNA and mRNA bound by miRNA) for 3 h. Then, the RNA in the immunoprecipitates was isolated and subjected to qRT-PCR as mentioned above.
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7

Identifying miR-942-5p and circ_0005927 Interaction

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The associated relationship between miR-942-5p and circ_0005927 was identified with RIP assay. Magna RIP Kit (Millipore, Bradford, MA, USA) was employed. Shortly, LoVo and SW620 cells were harvested and lysed with RIP lysis buffer (Millipore). The lysate was incubated with magnetic beads labeled with anti-argonaute2 (anti-AGO2) (1:50; Abcam, Cambridge, UK) or anti-immunoglobulin G (anti-IgG) (1:100; Abcam). After 24 h, beads were washed and protease K (Millipore) was used to digest proteins. RNA was purified and the contents of miR-942-5p and circ_0005927 were revealed by qRT-PCR.
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8

RNA-Protein Interaction Profiling

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Magna RIP RNA Binding Protein Immunoprecipitation Kit (Millipore, Bedford, MA, USA) was adopted to confirm the relationship between miR‐140‐5p and circ‐RNF111 or E2F3. Briefly, PTX‐resistant cells were lysed in RIP buffer and incubated with magnetic beads which were conjugated with anti‐Argonaute2 (anti‐Ago2; Abcam, Cambridge, MA, USA) or anti‐immunoglobulin G (anti‐IgG; Abcam). Next, proteinase K (Solarbio) was added to digest the protein. Finally, immunoprecipitated RNA was isolated and the enrichment of circ‐RNF111, miR‐140‐5p and E2F3 was determined by qRT‐PCR.
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